Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_J20
(1315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 35 0.16
01_03_0005 + 11568545-11569119,11569179-11569191 32 0.87
12_02_1174 - 26696869-26698191 32 1.2
02_01_0192 + 1302358-1302781,1303330-1303394,1303794-1303856,130... 31 1.5
12_02_0299 - 17051570-17052474,17053542-17053755 31 2.0
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 31 2.0
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 8.1
07_03_0177 - 14770777-14772045 29 8.1
05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420 29 8.1
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 34.7 bits (76), Expect = 0.16
Identities = 23/71 (32%), Positives = 24/71 (33%)
Frame = -2
Query: 579 PPLFXGXPXXPPXXGKXPXPPQIFXXXVFFGXXXXXXPXXEPPXPXGGGFFXXXKXXPPP 400
PP P PP G P PP P PP P GG K PPP
Sbjct: 329 PPPPKAAPPPPPPKGPPPPPPAKGPPP----PPPPKGPSPPPPPPPGG-----KKGGPPP 379
Query: 399 PPXXXKIKKPP 367
PP +PP
Sbjct: 380 PPPKGGASRPP 390
Score = 29.1 bits (62), Expect = 8.1
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 1065 PPXXFXXPPXPPXXXSXPXXXPPXGK 988
PP PP PP S P PP GK
Sbjct: 348 PPAKGPPPPPPPKGPSPPPPPPPGGK 373
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 32.3 bits (70), Expect = 0.87
Identities = 21/57 (36%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = +2
Query: 395 GGGGGXFFXXKKXPPPX--GXGGSXXGXXXXXXPKKTXXXNIWGGXGXXPXXGGXXG 559
GGGGG PPP G GGS G P T GG G GG G
Sbjct: 81 GGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGGGG--GGGGGWQQGGGGGG 135
>12_02_1174 - 26696869-26698191
Length = 440
Score = 31.9 bits (69), Expect = 1.2
Identities = 20/70 (28%), Positives = 21/70 (30%)
Frame = -1
Query: 577 PPFXGXXXXPPXXGXXPXPPPNIPXXGFFWXXXXXXPXXXTPXXPGGGXFFXXKKXPPPP 398
PP PP P PPP +P P P PG K PPP
Sbjct: 194 PPTRPPSVKPPVVQPKPQPPPTLPPPS-----PPPPPPTVPPRTPGDTPAVVEPKPQPPP 248
Query: 397 PXXXKNKKTP 368
P K P
Sbjct: 249 PPPRAPVKMP 258
Score = 29.9 bits (64), Expect = 4.7
Identities = 28/126 (22%), Positives = 30/126 (23%)
Frame = -2
Query: 747 PPXFLXPPGVXPPXXXAPXXXXXXXXXXXLXXPXXXPLXXXXPXXXPXLXXFFXXXPPLF 568
PP P PP P P+ P P L PP
Sbjct: 137 PPHRPPPVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPT 196
Query: 567 XGXPXXPPXXGKXPXPPQIFXXXVFFGXXXXXXPXXEPPXPXGGGFFXXXKXXPPPPPXX 388
PP P PP P P P K PPPPP
Sbjct: 197 RPPSVKPPVVQPKPQPPPTLPPP----SPPPPPPTVPPRTPGDTPAVVEPKPQPPPPPPR 252
Query: 387 XKIKKP 370
+K P
Sbjct: 253 APVKMP 258
>02_01_0192 +
1302358-1302781,1303330-1303394,1303794-1303856,
1304224-1304232
Length = 186
Score = 31.5 bits (68), Expect = 1.5
Identities = 21/65 (32%), Positives = 22/65 (33%)
Frame = +3
Query: 345 KKKXXXKKGVFLFXXXXGGGGGXFXXXKKXPPPGXXGVXXXGXXXXXXQKKPXXGIFGGG 524
KKK KG GGGGG PPP G Q +P GGG
Sbjct: 41 KKKARKSKGAGNKGEASGGGGGKGKEKALEPPPAVIRRAPAGSASVFQQPEPGFTPGGGG 100
Query: 525 XGFXP 539
G P
Sbjct: 101 GGKGP 105
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 31.1 bits (67), Expect = 2.0
Identities = 34/141 (24%), Positives = 36/141 (25%), Gaps = 5/141 (3%)
Frame = -3
Query: 914 FXXXPXFXGXPPPVFXXPPPXFXKXXPXSXXXXXXXFXXXPPFXXKXGPXGFFXGXPXXF 735
F P PPP P P P S F PP+ P F P F
Sbjct: 226 FPPIPFLTPPPPPFLPFPLPPIPFLTPPSPPPPAFPFPL-PPWPWAPPPAFPFPHLPPIF 284
Query: 734 *XPPGFXPPXXXXXXXXXFLGGXPXXXX-----PXPXPFXXFXPXXXPF*XXFFXGXPPF 570
P PP L P P P P P P F P
Sbjct: 285 SPPSPPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPPPPPPPSFPWPFPPLAPL 344
Query: 569 FXXXPXPPXXXXKXXPPPKYS 507
F P PP P +S
Sbjct: 345 FPPYPSPPPSMYSRKDPSTWS 365
Score = 29.5 bits (63), Expect = 6.2
Identities = 30/115 (26%), Positives = 33/115 (28%)
Frame = -2
Query: 651 PXXXPLXXXXPXXXPXLXXFFXXXPPLFXGXPXXPPXXGKXPXPPQIFXXXVFFGXXXXX 472
P P+ P P L F P F P PP P PP + F
Sbjct: 224 PWFPPIPFLTPPPPPFLP--FPLPPIPFLTPPSPPPPAFPFPLPPWPWAPPPAF-PFPHL 280
Query: 471 XPXXEPPXPXGGGFFXXXKXXPPPPPXXXKIKKPPXXXXXXFSPXXXFXXTQTPP 307
P PP P PPPPP P F P F + PP
Sbjct: 281 PPIFSPPSP------------PPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPP 323
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 31.1 bits (67), Expect = 2.0
Identities = 25/95 (26%), Positives = 25/95 (26%), Gaps = 2/95 (2%)
Frame = -2
Query: 795 PPFFXKXGXXGXFXGXPPXFLXPPGVXPPXXXAP--XXXXXXXXXXXLXXPXXXPLXXXX 622
PP G G PP FL PP PP P P P
Sbjct: 32 PPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQ 91
Query: 621 PXXXPXLXXFFXXXPPLFXGXPXXPPXXGKXPXPP 517
P P PP P PP P PP
Sbjct: 92 PPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPP 126
Score = 29.5 bits (63), Expect = 6.2
Identities = 25/95 (26%), Positives = 25/95 (26%), Gaps = 4/95 (4%)
Frame = -2
Query: 579 PPLFXGXPXXPPXXGKXPXPPQI-FXXXVFFGXXXXXXPXX---EPPXPXGGGFFXXXKX 412
PP F P PP P PQ F P PP P G
Sbjct: 48 PPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPP 107
Query: 411 XPPPPPXXXKIKKPPXXXXXXFSPXXXFXXTQTPP 307
PPPPP PP P PP
Sbjct: 108 PPPPPPPSPPPSAPPPPPPPPTQPPPREAQLAPPP 142
>09_06_0277 - 21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.1 bits (62), Expect = 8.1
Identities = 26/129 (20%), Positives = 33/129 (25%), Gaps = 1/129 (0%)
Frame = -3
Query: 902 PXFXGXPPPVFXXPPPXFXKXXPXSXXXXXXXFXXXPPFXXKXGPXGFFXGXPXXF*XPP 723
P PP + P P P S + PP P + P F PP
Sbjct: 625 PEVTPSPPEITPYPSPPDIVPSPPSYEPSPPSYEPSPPEYAPEPPV-YAPYPPGIFPSPP 683
Query: 722 GFXPPXXXXXXXXXFLGGXPXXXXPXPXPFXXFXPXXXPF*XXFFXGXPPFF-XXXPXPP 546
+ P P P P + P P+ P + P PP
Sbjct: 684 EYSPEPPSYVPSPPQYAPQPPSYVPSPPEYAPEPPVYAPYPPGITPSPPEYAPEPPPGPP 743
Query: 545 XXXXKXXPP 519
PP
Sbjct: 744 GGGGGYLPP 752
>07_03_0177 - 14770777-14772045
Length = 422
Score = 29.1 bits (62), Expect = 8.1
Identities = 36/133 (27%), Positives = 37/133 (27%), Gaps = 5/133 (3%)
Frame = +2
Query: 365 KGGFFIFXXXGGGGGXF-----FXXKKXPPPXGXGGSXXGXXXXXXPKKTXXXNIWGGXG 529
KGG F GGGGG F F G GG G K +G G
Sbjct: 63 KGGGFGGGGGGGGGGGFGGGGGFGGGGGGGLGGGGGGGLGGGGGFG-KGGGVGGGFGKGG 121
Query: 530 XXPXXGGXXGXPXKRGGXXKKKXFKXGXKXGXXXKRGXXXGXXXXXXXXXXXXXXGAXXX 709
GG G K GG G G G G G
Sbjct: 122 GFGKGGGFGGGFGKGGGIGGGIGHGAGGGFGKGGGLGGGIGPGIGGGYGKGGGLGGGIGK 181
Query: 710 GGXTPGGXKKXGG 748
GG GG K GG
Sbjct: 182 GGGLGGGFGKSGG 194
>05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420
Length = 433
Score = 29.1 bits (62), Expect = 8.1
Identities = 22/76 (28%), Positives = 24/76 (31%)
Frame = +1
Query: 394 GGGGGGXFXXXKKXPPXGXXGFXXGXXXXXPXKKNRXXEYLGGGXXFXXXXGGXGXXXKK 573
GGGGGG P G G G + Y GGG GG G
Sbjct: 42 GGGGGGPRGSGSSKPRRGDGGLGCGRG----DDSDLGLGYGGGGSGSDDGGGGLGFGVSG 97
Query: 574 GGXPXKKXX*XGXXXG 621
GG +K G G
Sbjct: 98 GGGGLRKRLGCGGDDG 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.154 0.508
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,528,656
Number of Sequences: 37544
Number of extensions: 703364
Number of successful extensions: 3720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2979
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4108797156
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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