Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_J19
         (1289 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39648-6|AAM15602.1|  557|Caenorhabditis elegans Abnormal dauer ...    30   3.1  
U39648-5|AAK39293.1|  572|Caenorhabditis elegans Abnormal dauer ...    30   3.1  
AF407572-1|AAL65132.1|  557|Caenorhabditis elegans DAF-9 isoform...    30   3.1  

>U39648-6|AAM15602.1|  557|Caenorhabditis elegans Abnormal dauer
           formation protein9, isoform b protein.
          Length = 557

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 635 PPAAVLXSSPXVTSQPTEELLREF*TVYGAVXLTHXTPP 751
           PP AV  +SP V     E+   E+  +YG +   H + P
Sbjct: 97  PPMAVFGNSPFVNILTPEQTFLEYREIYGPIFTLHLSQP 135


>U39648-5|AAK39293.1|  572|Caenorhabditis elegans Abnormal dauer
           formation protein9, isoform a protein.
          Length = 572

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 635 PPAAVLXSSPXVTSQPTEELLREF*TVYGAVXLTHXTPP 751
           PP AV  +SP V     E+   E+  +YG +   H + P
Sbjct: 112 PPMAVFGNSPFVNILTPEQTFLEYREIYGPIFTLHLSQP 150


>AF407572-1|AAL65132.1|  557|Caenorhabditis elegans DAF-9 isoform A
           protein.
          Length = 557

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 635 PPAAVLXSSPXVTSQPTEELLREF*TVYGAVXLTHXTPP 751
           PP AV  +SP V     E+   E+  +YG +   H + P
Sbjct: 97  PPMAVFGNSPFVNILTPEQTFLEYREIYGPIFTLHLSQP 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,007,383
Number of Sequences: 27780
Number of extensions: 257548
Number of successful extensions: 479
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3610322468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)