Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_J18
(1349 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.052
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.36
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.64
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.9
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 5.9
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.9 bits (74), Expect = 0.052
Identities = 21/54 (38%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Frame = -2
Query: 754 GGXGXXFXXTXGXGX-GGXXGGFXGGNXGXFXXPXGFPPXXXGXGFXXXXXGGG 596
GG G G G GG GGF GG G P GF G G GGG
Sbjct: 211 GGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
Score = 31.1 bits (67), Expect = 0.36
Identities = 22/63 (34%), Positives = 23/63 (36%)
Frame = -2
Query: 784 GXXEGPPFPXGGXGXXFXXTXGXGXGGXXGGFXGGNXGXFXXPXGFPPXXXGXGFXXXXX 605
G GPP GG G G G G G GG+ G P GF G G
Sbjct: 195 GGSGGPPPGPGGFG-------GFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF 247
Query: 604 GGG 596
GGG
Sbjct: 248 GGG 250
Score = 30.3 bits (65), Expect = 0.64
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = -2
Query: 754 GGXGXXFXXTXGXGXGGXXGGFXGGNXGXFXXPXGFPPXXXGXG 623
GG F G G GG GGF GG G P GF G G
Sbjct: 227 GGGPGGFEGGPG-GFGGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 709 GGXXGGFXGGNXGXFXXPXGF 647
GG GGF GG+ G P GF
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGF 207
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.36
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +3
Query: 690 NPPXXPPXPXPXVXXKXS-PXPPXGXGGPSXNPXRRXXNSGXGXPP 824
N PP P P S P PP G P P R ++G PP
Sbjct: 333 NSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 29.1 bits (62), Expect = 1.5
Identities = 22/94 (23%), Positives = 28/94 (29%), Gaps = 1/94 (1%)
Frame = +3
Query: 597 PPPXXXXKXPXPXXXGGNPXGXXKXPXXPPXNPPXXPPXPXPXVXXKXSP-XPPXGXGGP 773
P P P P P + P PP P P + + +P PP G
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASR 411
Query: 774 SXNPXRRXXNSGXGXPPPTGXXXXTPXFXPNGXP 875
+ P S PP+ P P G P
Sbjct: 412 TSTPPVPTPPSLPPSAPPS-LPPSAPPSLPMGAP 444
Score = 29.1 bits (62), Expect = 1.5
Identities = 19/81 (23%), Positives = 24/81 (29%)
Frame = +3
Query: 672 PXXPPXNPPXXPPXPXPXVXXKXSPXPPXGXGGPSXNPXRRXXNSGXGXPPPTGXXXXTP 851
P PP PP PP P + PP P P + PP P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Query: 852 XFXPNGXPLSGKXXLEXHPGK 914
P P++ L G+
Sbjct: 481 APAP-AAPVASIAELPQQDGR 500
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.64
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 681 PPXNPPXXPPXPXPXVXXKXSPXPPXG 761
PP NPP PP P + P PP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/61 (26%), Positives = 18/61 (29%)
Frame = +3
Query: 603 PXXXXKXPXPXXXGGNPXGXXKXPXXPPXNPPXXPPXPXPXVXXKXSPXPPXGXGGPSXN 782
P P P P P PP +P PP P S PP P +
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 783 P 785
P
Sbjct: 184 P 184
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.9
Identities = 18/55 (32%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Frame = +3
Query: 624 PXPXXXGGNPXGXXKXPXXPPXNPPXX-PPXPXPXVXXKXSPXPPXGXGGPSXNP 785
P P G P PP PP PP P P V P PP P P
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP--PVPPPSTAPPVPTP 1222
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +3
Query: 624 PXPXXXGGNPXGXXKXPXXPPXNPPXXPPXPXPXVXXKXSPXPPXG 761
P P G P P P PP P P V P P G
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSG 1177
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = -2
Query: 754 GGXGXXFXXTXGXGX-GGXXGGFXGGNXGXF 665
GG G G G GG GGF GG+ G F
Sbjct: 160 GGFGGGSRGGFGGGSRGGSRGGFRGGSRGGF 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.150 0.516
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,062
Number of Sequences: 5004
Number of extensions: 35711
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 743204572
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -