Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_J18
         (1349 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            31   0.076
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    29   0.41 

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 31.1 bits (67), Expect = 0.076
 Identities = 23/80 (28%), Positives = 25/80 (31%), Gaps = 2/80 (2%)
 Frame = +3

Query: 597 PPPXXXXKXPXPXXXGGNPXGXXKXPXXPPXNPPXXPPXPXPXVXXKXSPXPPXGXGGP- 773
           PPP    + P               P  P   PP  PP P P +    SP      GGP 
Sbjct: 549 PPPLNLLRAPFFPLNPAQLRFPAGFPNLPNAQPPPAPP-PPPPMGPPPSPLAGGPLGGPA 607

Query: 774 -SXNPXRRXXNSGXGXPPPT 830
            S  P       G   PP T
Sbjct: 608 GSRPPLPNLLGFGGAAPPVT 627


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 26/98 (26%), Positives = 29/98 (29%), Gaps = 2/98 (2%)
 Frame = +3

Query: 597 PPPXXXXKXPXPXXXGGNPXGXXKXPXXPPXNPPXXPPXPXPXVXXKXSPXPPXGXGGPS 776
           PP       P P   GG      + P  P    P  PP   P +     P PP   G   
Sbjct: 200 PPRTGTPTQPQPPRPGGM---YPQPPGVPMPMRPQMPPGAVPGMQPGMQPRPPSAQG--- 253

Query: 777 XNPXRRXXNSGXGXP--PPTGXXXXTPXFXPNGXPLSG 884
               +R    G   P  PP       P   P    LSG
Sbjct: 254 ---MQRPPMMGQPPPIRPPNPMGGPRPQISPQNSNLSG 288



 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/48 (29%), Positives = 16/48 (33%)
 Frame = +3

Query: 681 PPXNPPXXPPXPXPXVXXKXSPXPPXGXGGPSXNPXRRXXNSGXGXPP 824
           PP N     P P      K +P  P    G    P     +S  G PP
Sbjct: 381 PPRNFTMPGPGPGIGEREKSNPSRPPSVAGSYGKPNDHELDSSGGRPP 428


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.317    0.150    0.516 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 799,111
Number of Sequences: 2352
Number of extensions: 12126
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 155242890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)