Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_J18
         (1349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.6  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   8.0  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   8.0  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +1

Query: 733 ENXPPFPPXEXGXLPXTPPXGXPIXXXAXP 822
           E  PP PP     +P  P    PI     P
Sbjct: 635 ERLPPLPPKRIRKMPSMPLLPRPISCHTTP 664


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 645 GNPXGXXKXPXXPPXNPPXXPPXPXP 722
           G+P    + P  PP  PP  PP   P
Sbjct: 37  GSPPNPSQGP--PPGGPPGAPPSQNP 60


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 684 PXNPPXXPPXPXPXVXXKXSP 746
           P NP   PP P   V  + SP
Sbjct: 64  PYNPEHKPPGPKDLVYLEPSP 84


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 684 PXNPPXXPPXPXPXVXXKXSP 746
           P NP   PP P   V  + SP
Sbjct: 65  PYNPEHKPPGPKDLVYLEPSP 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.150    0.516 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 259,039
Number of Sequences: 438
Number of extensions: 6595
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 46704507
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)