Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_J16
(1337 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 32 0.89
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 31 2.1
02_05_0686 - 30900748-30902167,30903442-30904742 31 2.7
09_06_0206 - 21580240-21580467,21580544-21580591,21581533-215823... 29 6.3
09_02_0603 - 11150739-11150746,11150791-11151340 29 8.3
09_02_0580 + 10884012-10884081,10884173-10884419,10884472-108847... 29 8.3
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 29 8.3
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 32.3 bits (70), Expect = 0.89
Identities = 25/104 (24%), Positives = 27/104 (25%), Gaps = 1/104 (0%)
Frame = -2
Query: 898 GXXXXPXKXXPPXPXXXXXFXXXXXPPXPPPXXXXXKXKPXXXXXXFXPXXKGSXXXXXP 719
G P PP PP PPP P P + P
Sbjct: 688 GPPPPPPPPLPPANRTNGPGVPSAPPPPPPPPPANRSNGPSAPAPPLPPPLPAAANKRNP 747
Query: 718 PXXPXKXXFSXXXXGGXPXPPXXFFXFGXPLXP-PKGXXPPPXP 590
P P + P PP P P P G PPP P
Sbjct: 748 PAPPPPPLMTGKKAPAPPPPP--------PQAPKPPGTVPPPPP 783
Score = 29.1 bits (62), Expect = 8.3
Identities = 23/98 (23%), Positives = 26/98 (26%)
Frame = -2
Query: 883 PXKXXPPXPXXXXXFXXXXXPPXPPPXXXXXKXKPXXXXXXFXPXXKGSXXXXXPPXXPX 704
P PP P + PP PPP P P + PP P
Sbjct: 566 PPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPP 625
Query: 703 KXXFSXXXXGGXPXPPXXFFXFGXPLXPPKGXXPPPXP 590
P PP P P + PPP P
Sbjct: 626 PLPNHSVLPPPPPPPP-------PPSLPNRLVPPPPAP 656
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 31.1 bits (67), Expect = 2.1
Identities = 22/78 (28%), Positives = 25/78 (32%)
Frame = -2
Query: 823 PPXPPPXXXXXKXKPXXXXXXFXPXXKGSXXXXXPPXXPXKXXFSXXXXGGXPXPPXXFF 644
PP PPP P P +G+ P P G P P F
Sbjct: 19 PPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPP--------GPPPPHQPQF 70
Query: 643 XFGXPLXPPKGXXPPPXP 590
FG PP+ PPP P
Sbjct: 71 NFGP--GPPQQQQPPPPP 86
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.7 bits (66), Expect = 2.7
Identities = 17/44 (38%), Positives = 17/44 (38%)
Frame = -2
Query: 721 PPXXPXKXXFSXXXXGGXPXPPXXFFXFGXPLXPPKGXXPPPXP 590
PP P K G P PP P PPKG PPP P
Sbjct: 327 PPPPPPKAAPPPPPPKGPPPPPPA--KGPPPPPPPKGPSPPPPP 368
>09_06_0206 -
21580240-21580467,21580544-21580591,21581533-21582321,
21582779-21582979
Length = 421
Score = 29.5 bits (63), Expect = 6.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 187 FLKQRTNPWKNASEAGYVFDTALQRFLSMKV 279
F+ QR W N S +DT L RF+++K+
Sbjct: 44 FVAQRKLGWGNFSTVWLAYDTLLNRFVALKI 74
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 29.1 bits (62), Expect = 8.3
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = -2
Query: 721 PPXXPXKXXFSXXXXGGXPXPPXXFFXFGXPLXPPKGXXPPPXP 590
PP P F G P PP F + PP+ PPP P
Sbjct: 44 PPPPPPGSTFVPLPQSGVPPPPPLGSFF---VPPPQSRVPPPPP 84
>09_02_0580 +
10884012-10884081,10884173-10884419,10884472-10884735,
10885630-10886093,10888326-10888396
Length = 371
Score = 29.1 bits (62), Expect = 8.3
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +1
Query: 178 RREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSL 321
RR Q WKN S A + DT+L + + V Q V+ TSL
Sbjct: 202 RRWLRMQLDRTWKNLSTASTIKDTSLDYAVPLPVMQTAAEAVSNETSL 249
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 29.1 bits (62), Expect = 8.3
Identities = 22/91 (24%), Positives = 23/91 (25%)
Frame = -2
Query: 868 PPXPXXXXXFXXXXXPPXPPPXXXXXKXKPXXXXXXFXPXXKGSXXXXXPPXXPXKXXFS 689
PP P PP PPP P P PP K S
Sbjct: 74 PPPPAPRPPRRHHRIPPPPPPLLPTPPPPPASISPTPAPPLPPPPAPAPPPTPTPKFPSS 133
Query: 688 XXXXGGXPXPPXXFFXFGXPLXPPKGXXPPP 596
P PP + P P PPP
Sbjct: 134 ----SANPSPPDAYPFTNYPFFPNFAAPPPP 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,498,949
Number of Sequences: 37544
Number of extensions: 428235
Number of successful extensions: 2555
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2331
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4201914372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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