Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_J16
(1337 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71267-1|CAA95851.2| 172|Caenorhabditis elegans Hypothetical pr... 36 0.086
Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical pr... 31 1.8
Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical p... 31 1.8
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 1.8
AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl cholin... 31 1.8
AC084159-14|AAK39369.2| 480|Caenorhabditis elegans Hypothetical... 29 5.6
U41034-2|AAA82379.1| 915|Caenorhabditis elegans Hypothetical pr... 29 7.4
AF099919-3|AAC68801.2| 862|Caenorhabditis elegans Hypothetical ... 29 7.4
>Z71267-1|CAA95851.2| 172|Caenorhabditis elegans Hypothetical
protein W01A8.4 protein.
Length = 172
Score = 35.5 bits (78), Expect = 0.086
Identities = 19/87 (21%), Positives = 40/87 (45%)
Frame = +1
Query: 175 MRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVPMF 354
+++E+L++ +P + G D A+ R+ S +TQ E+F RT + +
Sbjct: 64 LKKEYLRREYDPHSFKYKEGVTMDPAMFRWYSADMTQAEFFRFTPRTVFLYVGTVFALFY 123
Query: 355 TFGTLIWNERTQREQKIRSGELRYKDR 435
+ L++ + + G+L + DR
Sbjct: 124 IYTRLMFVPMDKSNEACLDGKLLWWDR 150
>Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 31.1 bits (67), Expect = 1.8
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = +1
Query: 169 AEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVP 348
+E+ +FL R P ++++ + V +FE+F + F FV+
Sbjct: 466 SELSSKFLTSRMRPKSQKDNTFAAMQSSIKANRQLAVAEFEWFATVVERTCFVIFVVAFL 525
Query: 349 MFTFG 363
+ TFG
Sbjct: 526 IITFG 530
>Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 31.1 bits (67), Expect = 1.8
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = +1
Query: 169 AEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVP 348
+E+ +FL R P ++++ + V +FE+F + F FV+
Sbjct: 466 SELSSKFLTSRMRPKSQKDNTFAAMQSSIKANRQLAVAEFEWFATVVERTCFVIFVVAFL 525
Query: 349 MFTFG 363
+ TFG
Sbjct: 526 IITFG 530
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.1 bits (67), Expect = 1.8
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -2
Query: 721 PPXXPXKXXFSXXXXGGXPXPPXXFFXFGXPLXPPKGXXPPPXP 590
PP P GG P PP F P P G PPP P
Sbjct: 66 PPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPP 109
>AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl choline
receptor alpha subunitDES-2 protein.
Length = 548
Score = 31.1 bits (67), Expect = 1.8
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = +1
Query: 169 AEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVP 348
+E+ +FL R P ++++ + V +FE+F + F FV+
Sbjct: 466 SELSSKFLTSRMRPKSQKDNTFAAMQSSIKANRQLAVAEFEWFATVVERTCFVIFVVAFL 525
Query: 349 MFTFG 363
+ TFG
Sbjct: 526 IITFG 530
>AC084159-14|AAK39369.2| 480|Caenorhabditis elegans Hypothetical
protein Y73B3A.6 protein.
Length = 480
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -3
Query: 276 FHGQKPLQCCVENITSL--RSVFPGVCSLFQELPSHFSTP 163
F +Q C++N L R++ PG SL Q L HF+ P
Sbjct: 326 FKDHATIQSCMQNGVDLTIRNIPPGTTSLIQPLDVHFNGP 365
>U41034-2|AAA82379.1| 915|Caenorhabditis elegans Hypothetical
protein M02D8.3 protein.
Length = 915
Score = 29.1 bits (62), Expect = 7.4
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Frame = -3
Query: 414 STANLLFTLRSLVPYQGTKC---KHGYNNNKKSKQTSSLVYGKIFKLCYFHGQKPLQCCV 244
++A F RS P + C H NN++S ++ Y K + KP+ V
Sbjct: 221 TSATTGFRRRSESPIEFLGCILRNHPVLNNQRSCANAAARYNKNVPSLPLNTPKPITPVV 280
Query: 243 ENITSLRSVFPGVCSLFQELPSHFSTP 163
IT S G CSL +++PS P
Sbjct: 281 --ITECASNTNGSCSLAEDMPSALPVP 305
>AF099919-3|AAC68801.2| 862|Caenorhabditis elegans Hypothetical
protein F40G9.9 protein.
Length = 862
Score = 29.1 bits (62), Expect = 7.4
Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
Frame = +1
Query: 88 H*L*XWQITTAYLDAELNLIKTQASRRAEMRREFLKQRTNPWKNASEAG-YVFDTALQRF 264
H L WQ A+ + E LI+T+ E + + NPW + YVFD +++
Sbjct: 223 HCLELWQSGAAFQNLESLLIRTEKGYPLEPAMIYNQLDANPWDSDRRPQYYVFDEKMKKL 282
Query: 265 LSMKVTQFEYFTVNKRTSLFGFFVIVVPMFTFGTLIWNERTQREQKI 405
+K+ + K S F + + + N +++++ I
Sbjct: 283 HLVKLPVLVQKRIFKFLSTRDVFALSLCFRKLAVSVQNCKSEQQNMI 329
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,293,054
Number of Sequences: 27780
Number of extensions: 338060
Number of successful extensions: 1399
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3756810758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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