Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_J15
         (1316 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...    63   5e-10
AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical ...    40   0.004

>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score = 62.9 bits (146), Expect = 5e-10
 Identities = 32/74 (43%), Positives = 43/74 (58%)
 Frame = +3

Query: 165 VQRGLVGTLLERXEKSGIKXXGXQFVWPSVITXXINXXSDVASRPFFXGLVKYMSSGPVV 344
           V RGLVG ++ R E+ G K    + +  S     ++   D+  +PFF  L++YMSSGPVV
Sbjct: 16  VHRGLVGKIIARFEERGYKLVALKQMTASKAHLEVHY-QDLKDKPFFPSLIEYMSSGPVV 74

Query: 345 XMVWXGLXVXXXGR 386
            MVW GL V   GR
Sbjct: 75  AMVWQGLDVVKQGR 88



 Score = 31.9 bits (69), Expect = 1.0
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = +1

Query: 400 ATNXAXSQXXXMRRDLCIXXXRXIXXGXXXVDSGXXEIXLW 522
           ATN   S    +R D CI   R I  G   VDS   EI  W
Sbjct: 93  ATNPLASAPGTIRGDFCIQTGRNICHGSDAVDSANREIAHW 133


>AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical
           protein F55A3.6 protein.
          Length = 118

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 17/32 (53%), Positives = 21/32 (65%)
 Frame = +3

Query: 294 RPFFXGLVKYMSSGPVVXMVWXGLXVXXXGRL 389
           +PFF  L+ YMSSGPVV M+W G  V    R+
Sbjct: 33  KPFFPLLIDYMSSGPVVAMLWEGCDVVKRARV 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,285,029
Number of Sequences: 27780
Number of extensions: 61157
Number of successful extensions: 42
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3683964012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)