Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_J12
         (1399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.7  
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    27   6.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   6.2  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   8.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
 Frame = -1

Query: 1231 KXXPXPXXXXIXXFXKPPXXP-PEPXXXXGXPPPPXXFXXXPXRGPP 1094
            K  P P    I     P   P P P    G PPPP         GPP
Sbjct: 730  KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = -1

Query: 1222 PXPXXXXIXXFXKPPXXPPEPXXXXGXPPPP 1130
            P P          PP  PP P      PPPP
Sbjct: 748  PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 441 EXWGKGEMGLPSLKQEEIQ 497
           E + + EMGLPS+K E+IQ
Sbjct: 353 EFFMRAEMGLPSVKNEDIQ 371


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 20/82 (24%), Positives = 21/82 (25%)
 Frame = -1

Query: 1375 PPPXXFSXXPXXPXKXTPXPXXXXPXGXXPXXPXPXFFFXFXXTNXXXKXXPXPXXXXIX 1196
            PP    S  P  P      P    P    P  P P                P P    + 
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVG-VP 1208

Query: 1195 XFXKPPXXPPEPXXXXGXPPPP 1130
                P   PP P    G PP P
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVP 1230


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
            Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/42 (28%), Positives = 14/42 (33%)
 Frame = -1

Query: 1246 TNXXXKXXPXPXXXXIXXFXKPPXXPPEPXXXXGXPPPPXXF 1121
            +N      P P         +PP  PP P       PPP  F
Sbjct: 154  SNHVRSCPPFPPTQHHHPHTRPPHHPPHPHFHNNNYPPPYCF 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,323
Number of Sequences: 5004
Number of extensions: 35789
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 774999420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)