Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_J12
(1399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0299 - 17051570-17052474,17053542-17053755 36 0.10
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 0.15
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 35 0.18
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 32 0.94
07_01_0080 + 587674-588510 32 1.2
02_05_0686 - 30900748-30902167,30903442-30904742 32 1.2
07_01_0479 + 3606663-3607448 25 2.8
07_03_1136 + 24218601-24218734,24218769-24219906 31 2.9
03_05_0067 - 20460206-20460703,20461255-20461530 31 2.9
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 31 2.9
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 3.8
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 5.0
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 6.6
07_03_0558 + 19461369-19462448 29 8.7
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 35.5 bits (78), Expect = 0.10
Identities = 28/111 (25%), Positives = 31/111 (27%), Gaps = 5/111 (4%)
Frame = -1
Query: 1372 PPXXFSXXPXXPXKXTPXPXXXXPXGXXPXXPXPXFFFXFXXTNXXXKXXPX-----PXX 1208
PP F P P P P P P P P F + P P
Sbjct: 245 PPIPFLTPPSPPPPAFPFPLPPWPWAPPPAFPFPHLPPIFSPPSPPPPPPPAFPFPFPQL 304
Query: 1207 XXIXXFXKPPXXPPEPXXXXGXPPPPXXFXXXPXRGPPXXQXFXXFPXXTP 1055
+ F P P P PPPP P PP F +P P
Sbjct: 305 PPLPHFPPLPSFYPSPPPP--PPPPPPPPPSFPWPFPPLAPLFPPYPSPPP 353
Score = 34.7 bits (76), Expect = 0.18
Identities = 33/119 (27%), Positives = 33/119 (27%), Gaps = 10/119 (8%)
Frame = -1
Query: 1375 PPPXXFSXXPXXP-----XKXTPXPXXXXPXGXXPXXPXPXFFFXFXXTNXXXKXXPXPX 1211
PPP F P P P P P P P P F F P P
Sbjct: 234 PPPPPFLPFPLPPIPFLTPPSPPPPAFPFPLPPWPWAPPPAFPFPHLPP-IFSPPSPPPP 292
Query: 1210 XXXIXXFXKP-----PXXPPEPXXXXGXPPPPXXFXXXPXRGPPXXQXFXXFPXXTPFF 1049
F P P PP P PPPP P PP FP P F
Sbjct: 293 PPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPP------PPPPPPPPSFPWPFPPLAPLF 345
>03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 29.5 bits (63), Expect(2) = 0.15
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -1
Query: 1183 PPXXPPEPXXXXGXPPPPXXFXXXPXRGPP 1094
PP PP P PPPP P R P
Sbjct: 292 PPRIPPPPVGGTQPPPPPPPLANGPPRSIP 321
Score = 24.2 bits (50), Expect(2) = 0.15
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = -1
Query: 1375 PPPXXFSXXPXXPXKXTPXPXXXXPXGXXPXXPXP 1271
PPP P P + P P P G P P P
Sbjct: 267 PPPPQV---PPPPPQAPPPPPPNAPMGMPPRIPPP 298
>08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 34.7 bits (76), Expect = 0.18
Identities = 25/95 (26%), Positives = 29/95 (30%), Gaps = 1/95 (1%)
Frame = -1
Query: 1375 PPPXXFSXXPXXPXKXTPXPXXXXPXGXXPXXPXPXF-FFXFXXTNXXXKXXPXPXXXXI 1199
PPP + P + P P P P P P F F + P P
Sbjct: 31 PPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMY- 89
Query: 1198 XXFXKPPXXPPEPXXXXGXPPPPXXFXXXPXRGPP 1094
+ PP PP PPPP P PP
Sbjct: 90 --YQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPP 122
Score = 30.3 bits (65), Expect = 3.8
Identities = 23/97 (23%), Positives = 25/97 (25%)
Frame = -3
Query: 1376 PXPPXXFXXAXXPFXXNPXPXXXXPXGXXPXXXPPXFFFXFXXNKFXXKXKXPPPXXXDX 1197
P PP P P P P PP F + + PPP
Sbjct: 30 PPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPP-QM 88
Query: 1196 XXLXTPXXSPRTXXXXXXPPPPXXFXXPPXXGAPXXP 1086
P P PPPP PP P P
Sbjct: 89 YYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPP 125
Score = 29.1 bits (62), Expect = 8.7
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = -1
Query: 1222 PXPXXXXIXXFXKPPXXPPEPXXXXGXPPPPXXFXXXPXRGPP 1094
P P + PP PP P PPPP P + PP
Sbjct: 94 PPPPPYGVNSSQPPPPPPPPPSPPPSAPPPP---PPPPTQPPP 133
>01_06_1670 - 39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 32.3 bits (70), Expect = 0.94
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -1
Query: 1201 IXXFXKPPXXPPEPXXXXGXPPPPXXFXXXPXRGPP 1094
+ F +PP PP P PPPP P PP
Sbjct: 348 VRTFGQPPAPPPPPPFAPTLPPPPPPRRKPPSPSPP 383
>07_01_0080 + 587674-588510
Length = 278
Score = 31.9 bits (69), Expect = 1.2
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -1
Query: 1192 FXKPPXXPPEPXXXXGXPPPPXXFXXXPXRGPP 1094
F +PP PP P PPPP P PP
Sbjct: 88 FRRPPPPPPPPPSSGSPPPPPPPPPPPPPPPPP 120
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.9 bits (69), Expect = 1.2
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 1183 PPXXPPEPXXXXGXPPPPXXFXXXPXRGPP 1094
PP PP P G PPPP P PP
Sbjct: 340 PPKGPPPPPPAKGPPPPPPPKGPSPPPPPP 369
>07_01_0479 + 3606663-3607448
Length = 261
Score = 25.4 bits (53), Expect(2) = 2.8
Identities = 13/39 (33%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Frame = -1
Query: 1375 PPPXXF--SXXPXXPXKXTPXPXXXXPXGXXPXXPXPXF 1265
PPP F P P + P P G P P P F
Sbjct: 203 PPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPPF 241
Score = 23.8 bits (49), Expect(2) = 2.8
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = -1
Query: 1180 PXXPPEPXXXXGXPPPPXXFXXXPXRGPP 1094
P PP P PPPP P + PP
Sbjct: 234 PGMPPPPFRPGMPPPPPG--PQQPGQNPP 260
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 30.7 bits (66), Expect = 2.9
Identities = 25/96 (26%), Positives = 28/96 (29%), Gaps = 4/96 (4%)
Frame = +3
Query: 909 GGGXXQXPPXXXXXGXGXXXXNGXXGXPXXKKTLXXVGXXXXX----KGXXKNGVXXGXK 1076
GGG PP G G G + + G G + G
Sbjct: 114 GGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPP 173
Query: 1077 XNXWXXGGPLXGXXXKXXGGGGXPXXXXGSGGXXGG 1184
GGP G GGGG P G GG GG
Sbjct: 174 GGGGGGGGP--GRAPGGGGGGGGPGRAPGGGGGGGG 207
Score = 29.1 bits (62), Expect = 8.7
Identities = 24/79 (30%), Positives = 24/79 (30%)
Frame = +2
Query: 986 GPGXKKNXLXSGGXPXXXRXXKKRGXXGKXXKXLGXGGPPXXXXXKXGXGGGXPXXXXXF 1165
GPG GG P R G G G GG P G GGG
Sbjct: 181 GPGRAPGGGGGGGGPG--RAPGGGGGGGGLGGGGGEGGAPERVIGGGGGGGGALKCVVGG 238
Query: 1166 GGXXGGFXKXXNXPPXGXG 1222
GG GG K G G
Sbjct: 239 GGGGGGALKRAAGSGGGGG 257
>03_05_0067 - 20460206-20460703,20461255-20461530
Length = 257
Score = 30.7 bits (66), Expect = 2.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 1171 PPEPXXXXGXPPPPXXFXXXPXRGPP 1094
PP P G PPPP F P PP
Sbjct: 5 PPPPQWAMGPPPPPQYFQAGPPPPPP 30
>02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 30.7 bits (66), Expect = 2.9
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = -1
Query: 1183 PPXXPPEPXXXXGXPPPPXXFXXXPXRGPPXXQXFXXFPXXTP 1055
PP PP P PPPP P PP FP +P
Sbjct: 361 PPPPPPPPPPPRPPPPPPPIKKGAPPPAPP-KATMARFPKLSP 402
>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.3 bits (65), Expect = 3.8
Identities = 20/85 (23%), Positives = 24/85 (28%), Gaps = 3/85 (3%)
Frame = -1
Query: 1375 PPPXXFSXXPXXPXKXTPX---PXXXXPXGXXPXXPXPXFFFXFXXTNXXXKXXPXPXXX 1205
P P + P P P P P P P P + + P P
Sbjct: 537 PSPTAAAPPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPN 596
Query: 1204 XIXXFXKPPXXPPEPXXXXGXPPPP 1130
+ PP PP PPPP
Sbjct: 597 CLVPSPPPPPPPPPILPNRSVPPPP 621
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.9 bits (64), Expect = 5.0
Identities = 19/68 (27%), Positives = 20/68 (29%)
Frame = -2
Query: 1221 PXPXGGXXXXFXNPPXFPPNXXXXXGXPPPXPFFXXXXXGGPPXPKXFXXFPXXPRFFXX 1042
P P GG P PP G PPP P PP P F P
Sbjct: 1124 PPPIGGLGGH--QAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGG 1181
Query: 1041 LXXXGXPP 1018
+ PP
Sbjct: 1182 VAPPPPPP 1189
>09_06_0277 - 21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = -3
Query: 1220 PPPXXXDXXXLXTPXXSPRTXXXXXXPPPPXXFXXPPXXGAPXXPXVXLXSP 1065
PPP L P T PPPP + PP P V P
Sbjct: 379 PPPPPMSPSCLLPPIIPAPTFTYSSPPPPPLYYPPPPDISPSPPPSVTPLPP 430
>07_03_0558 + 19461369-19462448
Length = 359
Score = 29.1 bits (62), Expect = 8.7
Identities = 24/93 (25%), Positives = 25/93 (26%)
Frame = +3
Query: 1095 GGPLXGXXXKXXGGGGXPXXXXGSGGXXGGX*XXXIXXXXGXGFXFXXKFVXXKXKKKXG 1274
G L G G GG G GG GG + G GF G
Sbjct: 216 GSGLGGGQGGGFGAGGGAGGGIGGGGGFGGGGGGGLGGGHGGGFGGGAGVGSGAGGGVGG 275
Query: 1275 XGXXGXXPXGXXXXGXGVXXKGXXGXXEXXXGG 1373
G G G G G G G GG
Sbjct: 276 GGGFGGGGGGGLGGGHGSGFGGGAGVGGGAGGG 308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,658,934
Number of Sequences: 37544
Number of extensions: 433130
Number of successful extensions: 2323
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1647
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4408801040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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