Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_J12
(1399 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 33 0.36
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.36
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.36
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.36
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 2.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 2.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 2.6
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 30 3.4
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 4.5
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical protein
T24B8.4 protein.
Length = 866
Score = 33.5 bits (73), Expect = 0.36
Identities = 19/62 (30%), Positives = 19/62 (30%)
Frame = -1
Query: 1279 PXPXFFFXFXXTNXXXKXXPXPXXXXIXXFXKPPXXPPEPXXXXGXPPPPXXFXXXPXRG 1100
P P FF N P P PP P G PPPP F P
Sbjct: 59 PKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPP 118
Query: 1099 PP 1094
PP
Sbjct: 119 PP 120
Score = 32.3 bits (70), Expect = 0.84
Identities = 25/87 (28%), Positives = 25/87 (28%), Gaps = 3/87 (3%)
Frame = -2
Query: 1305 PPXGXXPXX---PXPXFFXFXXXQIXXXXXXPXPXGGXXXXFXNPPXFPPNXXXXXGXPP 1135
PP G P P P FF P P G PP G PP
Sbjct: 47 PPSGILPPGQSIPKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPP 106
Query: 1134 PXPFFXXXXXGGPPXPKXFXXFPXXPR 1054
P P F PP P P PR
Sbjct: 107 PPPMFGAPPP--PPPPSGLGVAPQPPR 131
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.5 bits (73), Expect = 0.36
Identities = 26/95 (27%), Positives = 27/95 (28%)
Frame = -2
Query: 1341 PLXXXPXXXXXXPPXGXXPXXPXPXFFXFXXXQIXXXXXXPXPXGGXXXXFXNPPXFPPN 1162
P+ P PP P P P I P P GG PP PP
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPG---GLPPITGGPPPPPPPGGLPPISGGPPP-PPP 763
Query: 1161 XXXXXGXPPPXPFFXXXXXGGPPXPKXFXXFPXXP 1057
PPP P G PP P P P
Sbjct: 764 PPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAP 798
Score = 30.3 bits (65), Expect = 3.4
Identities = 27/101 (26%), Positives = 29/101 (28%)
Frame = -1
Query: 1183 PPXXPPEPXXXXGXPPPPXXFXXXPXRGPPXXQXFXXFPXXTPFFXXPXXXXXXPTXQXV 1004
PP P P G PPPP P G P P P P P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPP-------PPPPPGGLPPISGGPPPPPPP- 764
Query: 1003 FFXSGXPLXPXXXXXPXPXXXXXGGXXXXPPPXXXGQVKPI 881
G P P P P GG PPP + P+
Sbjct: 765 --PGGCPPPP----PPPPPGGFKGGPPPPPPPGMFAPMAPV 799
Score = 29.9 bits (64), Expect = 4.5
Identities = 21/77 (27%), Positives = 21/77 (27%)
Frame = -1
Query: 1324 PXPXXXXPXGXXPXXPXPXFFFXFXXTNXXXKXXPXPXXXXIXXFXKPPXXPPEPXXXXG 1145
P P P P P P T P I PP PP
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLP-PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Query: 1144 XPPPPXXFXXXPXRGPP 1094
PPPP F P PP
Sbjct: 773 PPPPPGGFKGGPPPPPP 789
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.5 bits (73), Expect = 0.36
Identities = 26/95 (27%), Positives = 27/95 (28%)
Frame = -2
Query: 1341 PLXXXPXXXXXXPPXGXXPXXPXPXFFXFXXXQIXXXXXXPXPXGGXXXXFXNPPXFPPN 1162
P+ P PP P P P I P P GG PP PP
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPG---GLPPITGGPPPPPPPGGLPPISGGPPP-PPP 763
Query: 1161 XXXXXGXPPPXPFFXXXXXGGPPXPKXFXXFPXXP 1057
PPP P G PP P P P
Sbjct: 764 PPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAP 798
Score = 30.3 bits (65), Expect = 3.4
Identities = 27/101 (26%), Positives = 29/101 (28%)
Frame = -1
Query: 1183 PPXXPPEPXXXXGXPPPPXXFXXXPXRGPPXXQXFXXFPXXTPFFXXPXXXXXXPTXQXV 1004
PP P P G PPPP P G P P P P P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPP-------PPPPPGGLPPISGGPPPPPPP- 764
Query: 1003 FFXSGXPLXPXXXXXPXPXXXXXGGXXXXPPPXXXGQVKPI 881
G P P P P GG PPP + P+
Sbjct: 765 --PGGCPPPP----PPPPPGGFKGGPPPPPPPGMFAPMAPV 799
Score = 29.9 bits (64), Expect = 4.5
Identities = 21/77 (27%), Positives = 21/77 (27%)
Frame = -1
Query: 1324 PXPXXXXPXGXXPXXPXPXFFFXFXXTNXXXKXXPXPXXXXIXXFXKPPXXPPEPXXXXG 1145
P P P P P P T P I PP PP
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLP-PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Query: 1144 XPPPPXXFXXXPXRGPP 1094
PPPP F P PP
Sbjct: 773 PPPPPGGFKGGPPPPPP 789
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.5 bits (73), Expect = 0.36
Identities = 26/95 (27%), Positives = 27/95 (28%)
Frame = -2
Query: 1341 PLXXXPXXXXXXPPXGXXPXXPXPXFFXFXXXQIXXXXXXPXPXGGXXXXFXNPPXFPPN 1162
P+ P PP P P P I P P GG PP PP
Sbjct: 291 PITGGPPPPPGLPPITGGPPPPPPPG---GLPPITGGPPPPPPPGGLPPISGGPPP-PPP 346
Query: 1161 XXXXXGXPPPXPFFXXXXXGGPPXPKXFXXFPXXP 1057
PPP P G PP P P P
Sbjct: 347 PPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAP 381
Score = 30.3 bits (65), Expect = 3.4
Identities = 27/101 (26%), Positives = 29/101 (28%)
Frame = -1
Query: 1183 PPXXPPEPXXXXGXPPPPXXFXXXPXRGPPXXQXFXXFPXXTPFFXXPXXXXXXPTXQXV 1004
PP P P G PPPP P G P P P P P
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPP-------PPPPPGGLPPISGGPPPPPPP- 347
Query: 1003 FFXSGXPLXPXXXXXPXPXXXXXGGXXXXPPPXXXGQVKPI 881
G P P P P GG PPP + P+
Sbjct: 348 --PGGCPPPP----PPPPPGGFKGGPPPPPPPGMFAPMAPV 382
Score = 29.9 bits (64), Expect = 4.5
Identities = 21/77 (27%), Positives = 21/77 (27%)
Frame = -1
Query: 1324 PXPXXXXPXGXXPXXPXPXFFFXFXXTNXXXKXXPXPXXXXIXXFXKPPXXPPEPXXXXG 1145
P P P P P P T P I PP PP
Sbjct: 297 PPPPGLPPITGGPPPPPPPGGLP-PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 355
Query: 1144 XPPPPXXFXXXPXRGPP 1094
PPPP F P PP
Sbjct: 356 PPPPPGGFKGGPPPPPP 372
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 1.9
Identities = 27/92 (29%), Positives = 27/92 (29%)
Frame = -1
Query: 1183 PPXXPPEPXXXXGXPPPPXXFXXXPXRGPPXXQXFXXFPXXTPFFXXPXXXXXXPTXQXV 1004
PP PP P PPPP P PP P TP P P
Sbjct: 274 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPP--------PGRTP--GPPGMPGMPPPPPPS 323
Query: 1003 FFXSGXPLXPXXXXXPXPXXXXXGGXXXXPPP 908
F G P P P GG PPP
Sbjct: 324 RF--GPPGMGGMPPPPPPGMRYPGGMPPPPPP 353
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 1.9
Identities = 27/92 (29%), Positives = 27/92 (29%)
Frame = -1
Query: 1183 PPXXPPEPXXXXGXPPPPXXFXXXPXRGPPXXQXFXXFPXXTPFFXXPXXXXXXPTXQXV 1004
PP PP P PPPP P PP P TP P P
Sbjct: 284 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPP--------PGRTP--GPPGMPGMPPPPPPS 333
Query: 1003 FFXSGXPLXPXXXXXPXPXXXXXGGXXXXPPP 908
F G P P P GG PPP
Sbjct: 334 RF--GPPGMGGMPPPPPPGMRYPGGMPPPPPP 363
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 2.6
Identities = 26/96 (27%), Positives = 28/96 (29%), Gaps = 2/96 (2%)
Frame = -1
Query: 1375 PPPXXFSXXPXXPXKXTPXPXXXXPXGXXPXXPXPXFFFXFXXTNXXXKXXPXPXXXXIX 1196
PPP + P P +P P P G P P P P P
Sbjct: 255 PPPPPAAGSPPPPRTGSPPPP---PTGSPP--PPPAGGSPPPPRAGSPPPPPPPRGSPPT 309
Query: 1195 XFXKPPXX--PPEPXXXXGXPPPPXXFXXXPXRGPP 1094
PP P P PPPP P R PP
Sbjct: 310 GSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 345
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 2.6
Identities = 26/96 (27%), Positives = 28/96 (29%), Gaps = 2/96 (2%)
Frame = -1
Query: 1375 PPPXXFSXXPXXPXKXTPXPXXXXPXGXXPXXPXPXFFFXFXXTNXXXKXXPXPXXXXIX 1196
PPP + P P +P P P G P P P P P
Sbjct: 276 PPPPPAAGSPPPPRTGSPPPP---PTGSPP--PPPAGGSPPPPRAGSPPPPPPPRGSPPT 330
Query: 1195 XFXKPPXX--PPEPXXXXGXPPPPXXFXXXPXRGPP 1094
PP P P PPPP P R PP
Sbjct: 331 GSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 366
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 2.6
Identities = 26/96 (27%), Positives = 28/96 (29%), Gaps = 2/96 (2%)
Frame = -1
Query: 1375 PPPXXFSXXPXXPXKXTPXPXXXXPXGXXPXXPXPXFFFXFXXTNXXXKXXPXPXXXXIX 1196
PPP + P P +P P P G P P P P P
Sbjct: 261 PPPPPAAGSPPPPRTGSPPPP---PTGSPP--PPPAGGSPPPPRAGSPPPPPPPRGSPPT 315
Query: 1195 XFXKPPXX--PPEPXXXXGXPPPPXXFXXXPXRGPP 1094
PP P P PPPP P R PP
Sbjct: 316 GSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 351
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 30.3 bits (65), Expect = 3.4
Identities = 22/82 (26%), Positives = 22/82 (26%)
Frame = -1
Query: 1375 PPPXXFSXXPXXPXKXTPXPXXXXPXGXXPXXPXPXFFFXFXXTNXXXKXXPXPXXXXIX 1196
P P K P P P P P TN P P
Sbjct: 514 PAPGPHKEQRRSTSKDPPRPAPP-PVSSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQ-N 571
Query: 1195 XFXKPPXXPPEPXXXXGXPPPP 1130
PP PP P G PPPP
Sbjct: 572 LSGAPPPPPPPPPMLGGPPPPP 593
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.9 bits (64), Expect = 4.5
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Frame = -2
Query: 1221 PXPXGGXXXXFXNPPXFPPN---XXXXXGXPPPXPFF--XXXXXGGPPXP 1087
P P G F PP PP G PPP F GGPP P
Sbjct: 321 PPPQGAPQQGFGAPPQGPPQGGPPQGSFGAPPPQQFHAPSPQSFGGPPPP 370
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,696,950
Number of Sequences: 27780
Number of extensions: 305330
Number of successful extensions: 1151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3964944318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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