Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_J10
         (1310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    33   0.087
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    30   0.81 
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    28   3.3  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    27   4.3  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    27   5.7  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    27   5.7  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   7.6  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   7.6  

>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 33.1 bits (72), Expect = 0.087
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
 Frame = +1

Query: 346 KALHTKGE--RELVEFLTEEIVAERKA--QKVKSLPAEVEGFTVKGDGAEVVLTKQLKDE 513
           ++ HT G    +L+  L+ EI  E+     ++   P   +   V+G  A VVL  +  DE
Sbjct: 49  RSSHTAGNPRSKLINALSSEIDYEKNQVLSEISLPPVNYDIEDVQGS-AVVVLKAKHGDE 107

Query: 514 TIRVTFNVNHTVDSDDFEGDVQTEKQEFSEMRSKPQFE 627
            IR+T NV+  V       D   E+Q+F+E   + + +
Sbjct: 108 NIRITMNVSQDVT------DAVPEEQDFTEFEDEQELQ 139


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +1

Query: 382 EFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLKDETIRVTFNVNHTVDSD- 558
           E L  E+  ER  Q  +S+P  + GF    D     + +QL+   I    N   T D D 
Sbjct: 128 EVLPSEVELERTYQDQQSVPDAISGFQPDMDPRLREVLEQLEHSDI----NDEETSDFDE 183

Query: 559 DFEGDVQTEKQEFSEMRSKPQFE 627
           +FE  V + K + SE  ++P  E
Sbjct: 184 EFEKLVASGKADESEFYAQPFVE 206


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = +1

Query: 361 KGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLK 507
           K ERE+ E L  E+    K   V +LPA V   T KGD  +  LTK  +
Sbjct: 146 KSEREVAEKLANELEKSDKTVFVNNLPARV--VTNKGDYKD--LTKHFR 190


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -1

Query: 416 LRSATISSVRNSTSSLSPFV*SAFNPQPQLQVLEWLCSKLVEARVPSNLREQLMCHIPLV 237
           L SAT S+   S SS + F+ ++  P       E+   K  + R P NL   +   +PLV
Sbjct: 4   LTSATDSASLESDSSRNQFIINSLLPWYSCSEHEFPHRKARKRRSPKNLDWSVSVQMPLV 63

Query: 236 KSR 228
            S+
Sbjct: 64  TSK 66


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = +1

Query: 550 DSDDFEGDVQTEKQEFSEMRSKPQFEVDLVRGDTTLGFTCSYLQDPPAASADEYNDVFGI 729
           D +D + +++ EK+E  E + KP    ++   D T G     L+D  +   DE +D +  
Sbjct: 268 DDEDEDEELEGEKEEEEEEKEKP----EISNYDETEGKVNFSLEDSESLEFDEGSDDYDY 323

Query: 730 DEIT 741
            ++T
Sbjct: 324 AKLT 327


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 885 CLRAHGVHQSSGVHI 929
           C+R  GVH+S GVH+
Sbjct: 49  CIRCSGVHRSLGVHV 63


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 826 LLEEKGISNEFVQKLSDFSTAYEHTAYINLLESISK 933
           LL +K  S   ++KL D  +      ++NLLE ISK
Sbjct: 13  LLNQKNDSRPVIEKLKDNISGDLLNYFLNLLEEISK 48


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -1

Query: 536 TLNVTRIVSSLSCFVKTT-SAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSP 363
           +LN T   ++ S  + +T S+ +P T   ST+A          SAT SS + +TSSL P
Sbjct: 231 SLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSA------SATSSSAQYNTSSLLP 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,204,901
Number of Sequences: 5004
Number of extensions: 82421
Number of successful extensions: 251
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 717371258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)