Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_J09
         (1347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   168   1e-42
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.068
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   7.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    23   9.7  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  168 bits (409), Expect = 1e-42
 Identities = 89/209 (42%), Positives = 114/209 (54%), Gaps = 2/209 (0%)
 Frame = +3

Query: 195 LLTAYQ**RDISREGTYQGKHTILVNKGLR*GXXXXXXXXXXXXXXXXXXXXHRRLSPNI 374
           L T Y   RD+S E    G HT  V KGL+ G                    H  LSP  
Sbjct: 61  LATMYLWFRDMSTEANIHGAHTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTF 120

Query: 375 EXGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLFLTIL 548
           E G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L++TI 
Sbjct: 121 ELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIA 180

Query: 549 LGFYFTILQAYEYIEASFTXADRIYGSTFFIATGFHGIHVIXGTLFLLICYIRHLNNHFS 728
           L F F   QAYEY  A FT +D +YG++F+ ATG HGIH+I GT+ LL+        H +
Sbjct: 181 LSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNIYTYHLT 240

Query: 729 KNHHFGFEAAA*Y*HFVDVV*LFLYISIY 815
             HH GFE    Y HF DVV LFLY++IY
Sbjct: 241 NTHHNGFECGIYYWHFCDVVWLFLYLTIY 269


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.068
 Identities = 17/51 (33%), Positives = 17/51 (33%)
 Frame = -3

Query: 1243 PXPPXGXXNPXPPXXPGPXXXXXXXXGPQNPTPLPXXXAXXXXXKTPPPPP 1091
            P PP     P P   P P        G   P P P   A       PPPPP
Sbjct: 733  PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.9 bits (64), Expect = 0.84
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 1149 PPFPXXXPXLXXXKPPPPPPXP 1084
            PP P   P +    PPPPPP P
Sbjct: 761  PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 1146 PFPXXXPXLXXXKPPPPPPXP 1084
            P P   P      PPPPPP P
Sbjct: 748  PIPVPPPAPIMGGPPPPPPPP 768


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -1

Query: 1161 PKTQPPFPXXXPXLXXXKPPPPPPXPXNXK 1072
            P   PP P   P       PPPPP P   K
Sbjct: 5    PPGNPPPPPPPPGFEPPSQPPPPPPPGYVK 34


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 29/141 (20%), Positives = 31/141 (21%)
 Frame = -3

Query: 1315 PPXXXXXPXXPXXXFXXXXPXXGNPXPPXGXXNPXPPXXPGPXXXXXXXXGPQNPTPLPX 1136
            PP        P        P    P P      P  P   G          P  P P P 
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIP--PVPKPS 1098

Query: 1135 XXAXXXXXKTPPPPPXTXXXXKXPXXXXNXFXPXXXXPXXPXPPXXPXXXXFSXXXXXGX 956
              A      +   PP        P    +   P    P    P   P           G 
Sbjct: 1099 VAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGA 1158

Query: 955  PXXPXXXXXXGPXXPPXRGIP 893
            P  P       P   P  GIP
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIP 1179


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 17/48 (35%), Positives = 18/48 (37%)
 Frame = +2

Query: 1085 GXGGGGGGFXXXXXGXXXGKGGWVLGXXXXPXXXPXXXXXGGGGVXXP 1228
            G GGG GGF     G   G GG+  G        P     G GG   P
Sbjct: 225  GFGGGPGGFEGGPGGFGGGPGGFG-GGLGGFGGGPGGFGGGPGGHGGP 271


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 22.6 bits (46), Expect(2) = 9.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -1

Query: 1107 PPPPPPXPXNXKXXP 1063
            PPPPPP   N    P
Sbjct: 312  PPPPPPSRRNRGKPP 326



 Score = 21.8 bits (44), Expect(2) = 9.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 1110 KPPPPPPXP 1084
            K PPPPP P
Sbjct: 309  KRPPPPPPP 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,381,636
Number of Sequences: 5004
Number of extensions: 56644
Number of successful extensions: 201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 741217394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)