Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_J09
         (1347 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   0.69 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   3.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   8.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect(2) = 0.69
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 1107 PPPPPPXPXN 1078
            P PPPP P N
Sbjct: 1857 PEPPPPPPRN 1866



 Score = 21.8 bits (44), Expect(2) = 0.69
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 1128 PXLXXXKPPPPPP 1090
            P     +PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 1110 KPPPPPPXP 1084
            +PPPPPP P
Sbjct: 1354 QPPPPPPPP 1362


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 152 NFNFNLIMXRIYYYPINSLSMMTR 223
           + NFN +  RI   P+N L   TR
Sbjct: 387 DLNFNEVNFRILNAPVNQLIRYTR 410


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,514
Number of Sequences: 438
Number of extensions: 6724
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 46584444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)