Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_J07
         (1334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    34   0.039
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    30   0.63 
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   1.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.5  
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma...    28   2.5  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    28   2.5  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    27   5.9  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   7.7  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    27   7.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   7.7  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 34.3 bits (75), Expect = 0.039
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 573 LPPPSNAASTPNTAIAPPL---IFPSTPVLAPVVSPPIINRTPEGKPVRKGYVP 725
           +PPPS A++ P  + APP+   + P     APV SPP     P   P     VP
Sbjct: 149 IPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202



 Score = 31.1 bits (67), Expect = 0.36
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 558 ASKGKLPPPSNAASTPNTAIAPPLIF---PSTPVLAPVVSPPIINRTP 692
           +S    PP + A  TP + + PP      PS P  +P  +PPI ++ P
Sbjct: 118 SSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAP 165



 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 573 LPPPSNAASTPNTAIAPPLIFPSTPVLAPVVSPPIINRTP 692
           LPPP+  A+   +  + P +  + P + P V PP +++ P
Sbjct: 171 LPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +3

Query: 735 KIQKELQEMKDREQELKKMRKKQK 806
           +++ EL+E ++RE+EL K R+K K
Sbjct: 383 RLEDELEEQRERERELAKKRRKNK 406


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 647 SIGTSSFPSYHQSYA*RETST-KGIRPRRREDTKGTTGNERQRTRAEENEE 796
           S G+S  P  H+ Y   E    +G     RED +G  G+ER R R  +  +
Sbjct: 8   SSGSSRIPKRHRDYRDEEPRRERGSGGIGREDPRGHYGSERPRRRRRDESD 58


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 576 PPPSNAASTPNTAIAPPLIFPSTPVLAPVVSPPII 680
           PPP    S P+T   PP +  S  V  P   PP I
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAI 395



 Score = 29.1 bits (62), Expect = 1.5
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 573 LPPPSNAASTPNTAI-APPLIFPSTPVLAPVVSPPIINRTPEGKP 704
           LPP  NA+ T    +  PP + PS P   P  +PP +   P G P
Sbjct: 403 LPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSL---PMGAP 444



 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 549 RFIASKGKLPPPSNAASTPNTAIAPPLIFP--STPVLAPV 662
           R   S G+ PPP +++   +   APP   P  S P L P+
Sbjct: 367 RSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPL 406


>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/30 (36%), Positives = 25/30 (83%), Gaps = 2/30 (6%)
 Frame = +3

Query: 723 PVEEKIQ--KELQEMKDREQELKKMRKKQK 806
           P E++++  ++L E+K+RE+ELK+ +++Q+
Sbjct: 34  PYEKRMEQKRKLDEIKEREKELKREKEEQR 63


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 17/71 (23%), Positives = 29/71 (40%)
 Frame = +3

Query: 495 NGYTRRFTPQTGTKGIMQRFIASKGKLPPPSNAASTPNTAIAPPLIFPSTPVLAPVVSPP 674
           NGY ++ +P +    I  R   +      P  A+ TP++    P     +P L+ + S  
Sbjct: 243 NGYRKKPSPLSPNSSIRNREGGNGSYFDGPLTASPTPSSPTGTPNSMSKSPSLSSLASTG 302

Query: 675 IINRTPEGKPV 707
              R    KP+
Sbjct: 303 ASYRPGPSKPL 313


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 573 LPPPSNAASTPNTAIAPPLIFPSTPVLAP 659
           LP  S   S+PN+ ++  ++  STP+L P
Sbjct: 416 LPQRSRTISSPNSPLSATVLPSSTPILLP 444


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = +3

Query: 729 EEKIQKELQEMKDREQE--LKKMRKKQKPFD 815
           + K+ +E++E   R+QE  LKK+R+K+K  D
Sbjct: 569 QAKLLEEIEEENKRKQERELKKIREKEKKRD 599


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 567 GKLPPPSNAASTPNTAIAPPLI 632
           G  PPPS++A++  T IA PL+
Sbjct: 213 GHPPPPSDSANSSVTPIAAPLV 234


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 576 PPPSNAASTPNTAIAPPLIFPSTPVLAPVVSPP 674
           PPP  A   P  A AP  + P  P++     PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,998,091
Number of Sequences: 5004
Number of extensions: 71702
Number of successful extensions: 300
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 733268682
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)