Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_J07
         (1334 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   7.9  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   7.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   7.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 600  LRPHLKAGAAFLCW 559
            LRP+L+  AA L W
Sbjct: 1178 LRPYLRTAAAILTW 1191


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 7/19 (36%), Positives = 17/19 (89%)
 Frame = +3

Query: 732 EKIQKELQEMKDREQELKK 788
           E+ +KE+++M++RE+E ++
Sbjct: 63  EQQRKEMEQMREREREQRE 81


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 17/77 (22%), Positives = 31/77 (40%)
 Frame = +3

Query: 576 PPPSNAASTPNTAIAPPLIFPSTPVLAPVVSPPIINRTPEGKPVRKGYVPVEEKIQKELQ 755
           P  +  + TP+       I  + P+LA  ++ P    +P   P         E IQ E  
Sbjct: 90  PTSTTTSVTPSCRRQRYNIAAANPLLAEKLAAPSSQASPTSIPYATRAEIKTESIQPETT 149

Query: 756 EMKDREQELKKMRKKQK 806
           ++  RE +     +K++
Sbjct: 150 KVDTREVQPHDASEKEQ 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 283,004
Number of Sequences: 438
Number of extensions: 5321
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 46104192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)