Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_J06
(1344 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 30 0.84
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 28 2.6
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 2.6
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 28 3.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.5
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 4.5
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 27 5.9
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 27 7.8
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 29.9 bits (64), Expect = 0.84
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 101 LSKVVIIQYSCYSLHYF*TITRNFIYS 181
L++ +I+ YS S+H T+TR FIYS
Sbjct: 529 LNRRLILHYSFESVHQLKTLTRKFIYS 555
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 28.3 bits (60), Expect = 2.6
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Frame = +3
Query: 444 SNMQRQAISQAFT-REYGRDLIEDLKSELGGHFEDVIVALMTPPE--EYLCQELHRCMEG 614
+N++ Q + Q T ++ + + + +G FE+ I L E + L LH +
Sbjct: 753 TNLEDQLVDQTVTINKFAFERDQFRERSMG--FENTIKDLTRKMEATDMLNVSLHESLRS 810
Query: 615 MGTDEDTLVEILCTRTKPEIA---AIVDTYERLYDRPLAEHMCSET-SGDFRRLL 767
+ T+ LV + K E+ AI+D +YD+ A+H ET S D + L
Sbjct: 811 VQTENSELVTEMAL-LKAELVKKQAIIDANANIYDKLTADHTNYETVSADINQNL 864
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 28.3 bits (60), Expect = 2.6
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -3
Query: 748 PDVSEHMCSASGRSYNRSYVSTIAAISGLVLVQRISTRVSSS-VPIPSMQRCSSWHRYSS 572
P+V M S + SY T + + + T +++ +P+P +R S Y+S
Sbjct: 145 PNVMSQMPPPPSYSSSGSYSQTYQSNANYTASSPLPTASANAPLPVPPPRRVSQNSSYAS 204
Query: 571 GGVIRATITSSK*P 530
G V AT S+ P
Sbjct: 205 GSVPAATAASTASP 218
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 240 FGSAENRRSPF-SIFDTNPRILT 305
+G N +SPF IF TNPRIL+
Sbjct: 180 YGFQGNEKSPFIKIFTTNPRILS 202
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 4.5
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Frame = -3
Query: 784 PTTMS--VRRRRKSPDVSEHMCSASGRSYNRSYVSTIAAISGLVLVQRISTRVSSSVPIP 611
PT+ S + SP S + S + S+ ST+++ S S+ SSS P
Sbjct: 336 PTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPAS 395
Query: 610 SMQRCSSW--HRYSSGGVIRATITSSK*PPNS-DFRSSMRSLPYS 485
S SS H+ SS + SS NS RSS S +S
Sbjct: 396 SSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHS 440
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 4.5
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = -3
Query: 751 SPDVSEHMCSASGRSYNRSYV---STIAAISGLVLVQRISTRVSSSVPIPSMQRCSSWHR 581
S +S S+S +Y+ S + ST+ + S ++V SSS PIPS S +
Sbjct: 651 SSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYS 710
Query: 580 YSSGGVIRATITSSK*PPNSDFRSSMRS 497
S + ++++ + +S +S+ S
Sbjct: 711 ASLSNITHSSLSLTAMSSSSAIPTSVNS 738
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 27.1 bits (57), Expect = 5.9
Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 9/136 (6%)
Frame = +3
Query: 576 EYLCQELHRCMEGMG-------TDEDTLVEILCTRTKPEIAAIVDTYERLYDRPLAEHMC 734
EYL Q C+ +G + +DTLV+ L + K + +VD L+D L+ M
Sbjct: 304 EYLIQPWSDCLVDVGFKLVNDESKDDTLVQELLSFHK-FLQVVVDE-SFLHDETLSYAM- 360
Query: 735 SETSGDFRRLLTLIVVGARADEAPADPERARELAQELYDAGEAKWGTD--EEVFNRILXH 908
R+ + GA+ + A + L GE G +EVF+ IL
Sbjct: 361 -------RKAFETFINGAKGSQREAPARLIAKYIDYLLRVGEQASGGKPLKEVFSEILDL 413
Query: 909 XSFAQLRQIFEEYXNI 956
+ + IFE Y +
Sbjct: 414 FRYIASKDIFEAYYKL 429
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 123 NIVVIHYTISKQ*REILYTALIKINCFFYNSHTVSP 230
N+ +HY K+ L LI NCF YNSH P
Sbjct: 352 NLKNLHYNSKKEFVHDLM--LIWSNCFLYNSHPDHP 385
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,210,657
Number of Sequences: 5004
Number of extensions: 80618
Number of successful extensions: 201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 739230216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -