Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_J06
         (1344 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            26   2.8  
Z18888-1|CAA79326.1|  258|Anopheles gambiae chymotrypsin 2 protein.    25   6.6  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    25   6.6  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    24   8.7  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 626 IRAHTLHATVQLLAQVLLRGSHQ 558
           I++HT+HA   +L  VL+ GS +
Sbjct: 750 IKSHTIHALEDMLVVVLIYGSQK 772


>Z18888-1|CAA79326.1|  258|Anopheles gambiae chymotrypsin 2 protein.
          Length = 258

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 658 LVQRISTRVSSSVPIPSMQRCSSWHRYSSGGVIRATITS 542
           LVQ +   +  +VP+ +  R + W R S+ G +R  + S
Sbjct: 134 LVQSVEY-LEKAVPVNATVRLTGWGRTSTNGNVRTLLQS 171


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 297 ILTEMAYQRAPTVVGVPNFNAVEDAAALRAAMKGF 401
           I ++MA  +AP + G+PN  AV+ A  L     GF
Sbjct: 481 IASQMANHKAPGLDGIPN-AAVKTAIMLFPESSGF 514


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
 Frame = +3

Query: 273 SIFDTNPRILTEMAYQ----RAPTVVGVPN 350
           S+ D  PR L ++A+Q    +AP + G+PN
Sbjct: 423 SVDDVTPRELQDIAHQMATRKAPGLDGIPN 452


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,100,327
Number of Sequences: 2352
Number of extensions: 20924
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 154430100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)