Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_J03
         (1309 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0218 + 18219956-18220555                                         33   0.66 
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938     31   2.7  
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    30   3.5  

>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 32.7 bits (71), Expect = 0.66
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = -3

Query: 845 NGGXVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 666
           NGG     ++ A    +T  P     R R   R E  G  + KR+GR R    G  RGKR
Sbjct: 81  NGGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKR 136

Query: 665 LVS 657
             S
Sbjct: 137 RAS 139


>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
          Length = 331

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 14  TIGNSLDSHVXXXVFFFFXXXPYFXFFFFWXXGRGS 121
           T+G+  D       FFFF    +F FFFF+   R S
Sbjct: 55  TVGSKEDFFFFFFFFFFFFFFFFFFFFFFFFFDRAS 90


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +1

Query: 565 CWRFSIGSAPLTSITKIDAQVXGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 723
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,381,423
Number of Sequences: 37544
Number of extensions: 470508
Number of successful extensions: 1357
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4085517852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)