Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_J02
         (1334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    91   2e-19
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    34   0.039
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    32   0.21 
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    31   0.27 
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    30   0.83 
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    29   1.5  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        29   1.9  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    29   1.9  
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    28   2.5  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    28   3.4  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    28   3.4  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    27   4.4  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    24   7.2  
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit...    27   7.7  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    27   7.7  

>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 91.5 bits (217), Expect = 2e-19
 Identities = 66/210 (31%), Positives = 109/210 (51%), Gaps = 1/210 (0%)
 Frame = +3

Query: 168 MPKSXXHLIVDTSAFIRAANL-QDIAENVYTIQEVIDEITNDRQRKKLVVLPYDLKVKDV 344
           M KS  HL++DT   I ++ L ++ AE+ YTI  VI EI ++  RK   +    +  +  
Sbjct: 1   MSKSITHLVLDTGGIICSSTLLRNSAESFYTIPRVIAEIRDETSRKNFELWGDQVIQRVP 60

Query: 345 FADNIKFITEFSKKTGDYSSLSATDIKVMALTYQLEKEKVGGTEHLKDEPTMQKSVKVTG 524
             + IK ++EF+K+TGDYSSLS TDI+++ALTY+LE E  GG   L+  P  QK +    
Sbjct: 61  KPEFIKKVSEFAKQTGDYSSLSVTDIQILALTYELEVEFNGGDWRLRKYPG-QKHINGKP 119

Query: 525 LAGFNLHPNYENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQXCQT 704
            +  N   + E+A++ T   D+ +    E S+P +    E +  ET +    K       
Sbjct: 120 PSNSN---STEDASKPT-SSDTASVKETENSDP-KSAENEVLEGETTQHSNNKEAHPNTE 174

Query: 705 TTNETDDDKLXEEISKQINDMDLKDDKVDE 794
              E +D++  +E    I   +++  K ++
Sbjct: 175 ENKEQEDNEEDDEDDGWITPSNIRKKKAED 204


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 34.3 bits (75), Expect = 0.039
 Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
 Frame = +3

Query: 555 ENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQXCQTTTNETDDDKL 734
           E  + E  +KD   ++ KET + +++   +  +V+  E+  ++     + T ++   DK+
Sbjct: 462 ETDSIEANDKDEKTDS-KETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKV 520

Query: 735 XEEISKQINDMDLKDD--KVDELMVKVSDEEAXXXYDDDDD 851
            +  SK  N+   KDD  + +E   KV  ++     ++  D
Sbjct: 521 EQTDSKDTNEKPAKDDNKEANEKAEKVDSKDVKEKIEEAAD 561


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = -1

Query: 473 RTANLLLL*LVGQCHNLNICSREARIITCFLREFSNEFYVICEDILDF*VVWKDNEL 303
           + ANLL L  + +    ++  +    +T  + +  N FYV+CE+ +D  +  KD EL
Sbjct: 713 KLANLLELPHLAEVLPFSVSRQPLLSLTNDILQLYNNFYVLCEETMDTVIKLKDGEL 769


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 21/101 (20%), Positives = 42/101 (41%)
 Frame = +3

Query: 561 ANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQXCQTTTNETDDDKLXE 740
           A Q+      N+         L     E   + T E  +         + N+T  +K  +
Sbjct: 21  AEQDAASVKINSTRASPNGSDLLNDDSEAAKITTNEK-QSSPVDSHNESPNDTTINKGED 79

Query: 741 EISKQINDMDLKDDKVDELMVKVSDEEAXXXYDDDDDEXXD 863
               ++++++  D K DE  V+ ++EEA    ++++DE  D
Sbjct: 80  GNENEVDNVNNNDKKEDEDNVEENEEEADANEEEEEDEEDD 120


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
 Frame = +3

Query: 591 NANNNKETSEPLQQPIGETVNVETGESFEVKHQQXCQTTTNETDD----DKLXEEISKQI 758
           +ANN  E    L+Q +    N    +  EV  +    +++N+ DD    D L  E+S+++
Sbjct: 676 DANNLPEMQFALEQELES--NSSDDDVVEVHRELSHNSSSNDEDDGNDEDPLSREMSRRL 733

Query: 759 N-------DMDLKDDKVDELMVKVSDEEAXXXYDDDDDEXXD 863
           +       D D +D     +  ++SD  A      D+D+  D
Sbjct: 734 SFESANDSDQDNRDHFAQYMSQQISDNNANQFSSSDEDDDDD 775


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 2/127 (1%)
 Frame = +3

Query: 423 KVMALTYQLEKEKVGGTEHLKDEPTMQKSVKVTGLAGFNLHPNYENANQETGEKDSNANN 602
           KV  LT+QL        E      +    +K       N+H N++    E  + +S   +
Sbjct: 225 KVNELTHQLNMADSKYNESKVANNSQNNQIKTLKAQNLNIHKNFQKIQSELIQTNSGLYS 284

Query: 603 NKETSEPLQQPIGETVNVETGESFEVKHQQXCQTTTNETDDD--KLXEEISKQINDMDLK 776
            K+    LQ      +   T ++ +++      + ++E ++   +L  E  +  N  +  
Sbjct: 285 TKKELSALQVRYATLLRKFTDQTKKIEELSLAASRSSENENTIRRLALENHELKNSNNQL 344

Query: 777 DDKVDEL 797
           ++ +D+L
Sbjct: 345 NNHIDDL 351


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = +3

Query: 651 NVETGESFEVKHQQXCQTTTNETDDDKLXEEISKQINDMDLKDDKVDELMVK--VSDE-- 818
           +++  E  E    +    ++  +   +L +E  K+ +  DL+     +L+      DE  
Sbjct: 364 SIQEKEIDETTESKATHDSSETSSSKELPKEEEKESSSFDLQPLSAQDLLFSGFAEDEIM 423

Query: 819 EAXXXYDDDDDEXXD 863
           +    YDDDDDE  D
Sbjct: 424 DEEFGYDDDDDEEFD 438


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
 Frame = +3

Query: 480 LKDEPTMQKSVKVTGLAGFNLHPNY----ENANQETGEKDSNANNNKETSEPLQQPIGET 647
           L   P  Q  V++ G + ++   +        +QE  E D      K+ S  L++  GE+
Sbjct: 409 LPTAPVQQSKVQINGTSAYSTATDAVTKDAEESQEDVEMDIVIEKKKKKSSKLKEADGES 468

Query: 648 VNVETGESFEVKHQQXCQTTTNETDDDKLXEEISKQINDMD 770
              E  E  + KH++  +  + E++D +  ++  K     D
Sbjct: 469 SKKEKKEKKDKKHKK-SKRKSEESEDGESPKKKKKSKKSKD 508


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
 Frame = +3

Query: 450 EKEKVGGTEHLKDEPTMQKSVKVTGLAGFNLHPNYENAN--QETGEKDSNANNNKETSEP 623
           +KE +   E +K EP  Q   K    A     P  E A   QE GE++      +E ++P
Sbjct: 91  KKETIQPPEEVKTEPP-QPEEKEGKEAKEPEEPPKEEAEEPQEGGEEEEEEEEEEEITDP 149

Query: 624 LQQPIGETVNVETGESFEVKHQ-QXC--QTTTNETDDDKLXEEISKQINDMDLKDDKVDE 794
           L++   E   ++  +  EVKH  + C  + T      DK  + I +  +      D  D 
Sbjct: 150 LEKMTQEC--MDAPDCKEVKHHFEECTARVTKKVEQGDKSEDCIEEFFHLYHCARDCADP 207

Query: 795 LMVKV 809
            + KV
Sbjct: 208 KVFKV 212


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
 Frame = +3

Query: 537 NLHPNYE-NANQET--GEK-DSNANNNKETSEPLQQPIGETVNVETGESFEV---KHQQX 695
           N+ PN   N  QE   G K    +NN ++ ++ + +P     NV     FEV   +++  
Sbjct: 139 NMQPNVSWNVLQEPTRGIKVPKESNNTQQNNQFVMEPSQNKGNVNDANFFEVEYARNENM 198

Query: 696 CQTTTNE-TDDDKLXEEISKQINDMDLKDDKVDEL 797
            + +++E   DD L +EI K ++  +    K +E+
Sbjct: 199 NKLSSSELISDDLLEDEIMKPLSSGESLPKKEEEV 233


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +3

Query: 546 PNYENANQETGEKDSNANNNKETSEPLQQP-IGETVNVETGESFEVKHQQXCQTTTNETD 722
           P+ E+   E+ E D     + +  E  ++  I   V   TGE+  +++         E D
Sbjct: 296 PSEEDEESESPELDELLELDYQIGEDFKEKLIPRAVEWFTGEALALENYDGFSDLDVEED 355

Query: 723 DDKLXEEISKQINDMDLKD 779
           +D +    +++++D D +D
Sbjct: 356 EDDVESSSNEEVSDSDEED 374


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = +3

Query: 567 QETGE--KDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQXCQTTTNETDD-DKLX 737
           Q+TGE  KD+N + +K    P +    +   +ET +S    H    +  +   +    + 
Sbjct: 294 QDTGESNKDNNTSTSKHKKRPKRLSKFKQAKLETKKSGNKDHATSSEKLSLGNESIHSIN 353

Query: 738 EEISKQINDMDLKDDKVDE 794
           E  S  I + D  D+K+ E
Sbjct: 354 ETRSSSIEEPDNADNKIVE 372


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 24.2 bits (50), Expect(2) = 7.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 861 LXXHHHHHH 835
           L  HHHHHH
Sbjct: 478 LHRHHHHHH 486



 Score = 20.6 bits (41), Expect(2) = 7.2
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 852 HHHHHHXXL 826
           HHHHH   L
Sbjct: 482 HHHHHKTDL 490


>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
           subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 621 PLQQPIGETVNVETGESFEVKHQQXCQTTTNETDDDKLXEEISKQI 758
           P+Q P  E + +   E  E K ++  +    E DD  L +E  K++
Sbjct: 70  PVQGPPTEELIIPPEEMLETKEEESLKHAREENDDLHLDKETKKRL 115


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 363  FITEFSKKTGDYSSLSATDIKVMALTYQLEKEKVGGTEHLKDEPTMQKSVKVTGLA 530
            FIT F +   D+   +   +K+  L ++ E   +GG+   K     Q++ K+  LA
Sbjct: 1219 FITRFDRGHSDFQFDTERVLKIYRLFFEAEMTSLGGSAEEKYSWLEQQNSKLKELA 1274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,218,793
Number of Sequences: 5004
Number of extensions: 59780
Number of successful extensions: 264
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 733268682
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)