Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_J01
         (1272 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    69   1e-12
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    32   0.15 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   3.2  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    28   3.2  
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    27   4.2  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    27   5.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   7.3  

>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 69/292 (23%), Positives = 115/292 (39%), Gaps = 19/292 (6%)
 Frame = +1

Query: 181 NREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYE-------NGGN-ADEVPANP 336
           +RED L++FC+    D  + +FFLES+NW  ++A +  +E       +G   + +V   P
Sbjct: 2   DREDILKEFCNRNNIDVSQGRFFLESTNWNYELATALLHEVIPPEEDHGLQPSSDVSKVP 61

Query: 337 TSAASFSVLPDSDMXXXXXXXXXXXXXXXXXXX-TSNTKFGTIGXXXXXXXXXXXXXXAF 513
               S S +   D                     T++ KF T+                F
Sbjct: 62  EVTGSSSGISGGDQQPPRPLQRQQNTQGQGMKSGTASKKFATLRDLEGNDESAEEKSHLF 121

Query: 514 YAGGSERSGQQIL-GPSKGRKDIVSEMFKSVRERGAVVFEDEPTS-SXXXXXXXXXXXXX 687
             G  E+SG  +  G    +K +V ++ +  R+      +++ +  S             
Sbjct: 122 TGG--EKSGLSVEDGDPDPKKQLVRDILEKARQHTISPLDEQDSGPSSLASSWASVGQRL 179

Query: 688 XXLGQTADDHEPVSASNPQQQ------EQVRLVRLCLY--REGFTVDAGPLRHYSDPENA 843
               + +    PV+ S P ++      +  + +R  LY  R GF+VD GP+  Y DP N 
Sbjct: 180 GTENEASGSTTPVTQSGPPRENPPTESQPEKPLRRTLYFWRNGFSVDDGPIYTYDDPANQ 239

Query: 844 EFLSCIRRGEIPSELSGQGVSVRVSLXDSXHXECPDTWSXRRPSPGKGHMLG 999
           E L  I  G  P  L G  ++  + +    H    D  +  +P  GKG  LG
Sbjct: 240 EMLRYINSGRAPLHLLGVSMNQPIDVV-VQHRMDEDYVAPFKPFSGKGQRLG 290


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = +1

Query: 172 MSXNREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENGGNAD 318
           M  +    +  FC +T +  ++++ +L  ++  L  A++ F+E+GG  D
Sbjct: 1   MDGDEASLVANFCAITNSTPEKAQEYLSVADGDLSTAITLFFESGGVTD 49


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 778  DTVSPVSLALVVVDSMQTLARDHLQFVLIYSQL 680
            DTV  V + +++   +QTL R+H+  VLI  Q+
Sbjct: 2299 DTVQTVGIGIIL---LQTLTREHITVVLITGQI 2328


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 575 ISSLKCSRASESEEQSSLKTNQHPVEAVVEGASSPELA 688
           ISS + S  S + EQS    +  P E V +G+ SPE A
Sbjct: 445 ISSTQLSNESLTHEQSINGNSPSPNEGVFQGSFSPESA 482


>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 868 RGVCSSGTPHSPGRCSGAAD 809
           RG+C+  TP SPG   G  D
Sbjct: 9   RGLCTPSTPESPGSFKGVID 28


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 590 CSRASESEEQSSLKTNQHPVEAVVEGASSP 679
           CSR  ESEE  +   N+  V+ + E  S P
Sbjct: 34  CSRCKESEESCTYGVNEQAVQLLEEPLSRP 63


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 733  MQTLARDHLQFVLIYSQL 680
            +QTLARDH+ F L+ +Q+
Sbjct: 2270 LQTLARDHVAFTLMLAQV 2287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,636,823
Number of Sequences: 5004
Number of extensions: 66927
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 691537944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)