Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_J01
(1272 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0850 - 25354002-25354391,25354480-25354575,25355352-253556... 66 7e-11
04_04_0156 + 23160681-23160862,23161090-23161179,23163145-231634... 54 3e-07
10_08_0654 - 19616426-19616656,19617046-19617249,19617654-196178... 35 0.16
11_06_0739 + 26814463-26814809,26814891-26815217,26815458-26817636 32 0.84
06_01_0903 - 6939672-6939782,6940051-6940110,6940221-6940322,694... 32 1.1
06_03_0941 + 26179682-26182327 30 3.4
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196... 30 3.4
04_04_1541 + 34249778-34249882,34249964-34250115,34250225-342503... 29 5.9
03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,945... 29 7.8
>06_03_0850 - 25354002-25354391,25354480-25354575,25355352-25355634,
25357213-25357799
Length = 451
Score = 65.7 bits (153), Expect = 7e-11
Identities = 54/173 (31%), Positives = 75/173 (43%), Gaps = 2/173 (1%)
Frame = +1
Query: 514 YAGGSERSGQQILGPSKGRKDIVSEMFKSVRERGAVVFEDEPTSSXXXXXXXXXXXXXXX 693
Y GG E+SG + SK RK+ E+FK + +GA E
Sbjct: 190 YTGG-EKSGMVVRDRSK-RKNRADEIFKEAKRKGAKKGSFEARRKSKSFAGTGRLL---- 243
Query: 694 LGQTADDHEPVSASNPQQQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGE 873
T + EPV+ PQ E + + + + GFTV+ GPLR + DP NA FL I+ E
Sbjct: 244 ---TGESAEPVA---PQSPESI-VHNIYFWTNGFTVNDGPLRSFDDPANASFLKSIKNSE 296
Query: 874 IPSEL--SGQGVSVRVSLXDSXHXECPDTWSXRRPSPGKGHMLGXPTPPXXXP 1026
PSEL + + V V+L +CP+ P G LG P+ P
Sbjct: 297 CPSELEPADKKSQVNVNLV-RKEEKCPEPVKRAAPFHGAAKTLGTPSDNNSTP 348
Score = 43.6 bits (98), Expect = 3e-04
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 187 EDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENG-GNADEVPAN 333
+ + FC VT A + FFLES NW L+ A+ SFY++ G+A A+
Sbjct: 16 QSLVESFCGVTSATPQEAAFFLESHNWALESAVRSFYDSADGDASAAAAD 65
>04_04_0156 +
23160681-23160862,23161090-23161179,23163145-23163433,
23164574-23164669,23164755-23165123
Length = 341
Score = 53.6 bits (123), Expect = 3e-07
Identities = 35/118 (29%), Positives = 53/118 (44%)
Frame = +1
Query: 535 SGQQILGPSKGRKDIVSEMFKSVRERGAVVFEDEPTSSXXXXXXXXXXXXXXXLGQTADD 714
SG + P+ R++ V +F+ R+ GA+ + P G+TA
Sbjct: 91 SGMLVQDPT--RRNTVDSIFEQARQMGALQDQPPPFEDQSSSSRSFTGTGRLLSGETA-- 146
Query: 715 HEPVSASNPQQQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSEL 888
P + P L + + GFTVD GPLR Y DP NA+F+ I++ + P EL
Sbjct: 147 --PAAPPPPGNV----LHNIQFWNNGFTVDDGPLRDYDDPANADFIESIKKSQCPQEL 198
>10_08_0654 -
19616426-19616656,19617046-19617249,19617654-19617824,
19619617-19620411
Length = 466
Score = 34.7 bits (76), Expect = 0.16
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 172 MSXNREDTLRQFCDVTG-ADEDRSKFFLESSNWQLDVALSSFYENGGNADEVPANP 336
M+ +D + F VTG +D D L + NW L +A+SS N + D P+ P
Sbjct: 1 MAETVDDKVSYFQAVTGISDHDLCTEILAAHNWDLQLAVSSITANPSSPDPAPSAP 56
>11_06_0739 + 26814463-26814809,26814891-26815217,26815458-26817636
Length = 950
Score = 32.3 bits (70), Expect = 0.84
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +2
Query: 533 GPGNRS*GQVKA--GKISSLKCSRASESEEQSSLKTNQHP---VEAVVEGASSPELA 688
G G S GQ + G SSLK R +E S L+ HP V A E AS P +A
Sbjct: 892 GRGKSSIGQESSEDGSDSSLKRMRLAEPSSSSQLQVTGHPHPVVVAATEAASQPSMA 948
>06_01_0903 -
6939672-6939782,6940051-6940110,6940221-6940322,
6940464-6940513,6940686-6940750,6940849-6940931,
6941117-6941140,6941798-6941856,6942041-6942174,
6942823-6942884,6942908-6942976
Length = 272
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 190 DTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFY 297
D ++QF +TGA E + L++S+W L+ A FY
Sbjct: 32 DKVQQFMTITGASEKVALQALKASDWHLEGAFDFFY 67
>06_03_0941 + 26179682-26182327
Length = 881
Score = 30.3 bits (65), Expect = 3.4
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +1
Query: 721 PVSASNPQQQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQG 900
P+ A + + Q+++ R V AGP HY +P N + + I + E P +G
Sbjct: 347 PLDAEDKEDQDRITAER----NTPLVVTAGPSLHYPNPPNPDKVLYINKKEAPLLKVERG 402
Query: 901 VSVRVSL 921
V V S+
Sbjct: 403 VPVTFSV 409
>02_05_0888 -
32517876-32518087,32518320-32518694,32519551-32519638,
32520145-32520384,32521033-32521149,32521213-32521606,
32521752-32521998,32522086-32522315,32522768-32522823,
32522903-32523094,32523274-32523376,32523478-32523544,
32524312-32525154,32525547-32525670,32525965-32526213,
32526354-32526443,32526530-32526649,32526664-32526738,
32527001-32527147,32527255-32527365,32527446-32527667,
32527777-32527896,32527971-32528270,32528355-32528480,
32529246-32529360,32529556-32530019,32530119-32530253,
32530684-32530788,32530876-32531053,32531143-32531864
Length = 2188
Score = 30.3 bits (65), Expect = 3.4
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 256 SSNWQLDV-ALSSFYENGGNADEVPANPTSAA 348
SSNW L V A YE GG EV + P +A+
Sbjct: 358 SSNWDLSVGAAELIYEQGGYFSEVSSTPATAS 389
>04_04_1541 +
34249778-34249882,34249964-34250115,34250225-34250350,
34251868-34252030,34252601-34252678,34252749-34252847,
34253045-34253188,34253344-34253446,34255303-34255646,
34255727-34255891
Length = 492
Score = 29.5 bits (63), Expect = 5.9
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 184 REDTLRQFCDVT-GADEDRSKFFLESSNWQLDVALSSFYENGGNADEVPANPTSAAS 351
+E + F ++ G + + FL+ ++W L+ AL FY +G A P+ AA+
Sbjct: 11 KESLVTSFLEIAAGQTPETATQFLQMTSWHLEEALQLFYIDGEAALAAHPAPSPAAA 67
>03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,
9451345-9451945,9452206-9452239,9452514-9452577,
9452909-9453325,9453439-9453523,9453773-9453831,
9453931-9454043,9456407-9456509,9456597-9456654,
9456781-9456834,9456922-9457131,9457254-9457312,
9457436-9457495,9457709-9457802,9458366-9458506,
9458562-9458741
Length = 964
Score = 29.1 bits (62), Expect = 7.8
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = +1
Query: 694 LGQTA-DDHEPVSASNPQ---QQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCI 861
LG T D + V A+N + L+ LCL E F D L +P+ ++C+
Sbjct: 896 LGYTILSDEQLVLANNSNLSNNSTDIALLMLCLLTEAFYADGTSLGDVCEPKLGAEITCL 955
Query: 862 RR 867
RR
Sbjct: 956 RR 957
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,138,385
Number of Sequences: 37544
Number of extensions: 486872
Number of successful extensions: 1503
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3945842028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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