Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_I24
         (1252 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    64   3e-11
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    31   0.33 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    28   3.1  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   4.1  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   5.4  
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    27   7.2  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   9.5  

>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 64.5 bits (150), Expect = 3e-11
 Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
 Frame = +2

Query: 263 IWVLGKKYSAIQDL---DRIRRDITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMV 433
           IW LG  Y  I+D    ++   D  S+I  TYR G    G E +TSD GWGCM+R  Q +
Sbjct: 26  IWFLGHSYK-IEDSQWPEKFLYDSFSLITITYRSGIE--GLENMTSDTGWGCMIRSTQTL 82

Query: 434 LGVALVRVHLSVDWVWSPETRDPTYLKIIQRFEERKQAPYSIHQVALMGASE-GKEVGQW 610
           L   L         +  PE +     +I+  F +   AP+SIHQ   MG +      GQW
Sbjct: 83  LANCL--------RICYPEKQ---LKEILALFADEPSAPFSIHQFVTMGKTLCDINPGQW 131

Query: 611 FGPNT 625
           FGP T
Sbjct: 132 FGPTT 136


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 189 LICVIYRERMVIMLNLTIFLKQRKVSGYWGKN 284
           L+ ++Y  R+ + LNLT    Q  V GYWG N
Sbjct: 7   LLLLVYSARLALSLNLT---NQTAVLGYWGSN 35


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 501 GSLVSGDHTQSTDKCTLTRATPNTICPHRNIQPHPLSEVKPSSP 370
           GSL S   + +      + A P T+   RN  P+P +  +P+ P
Sbjct: 325 GSLHSKSPSPAFTANRFSPAAPTTVSSERNAPPYPSAPTRPTPP 368


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
 Frame = -2

Query: 435 NTICPHRNIQPHPLSEVKPSSPIG--TKPFLYVHHIIDVISLLIRSKSCIALYFFPSTQI 262
           +T+       PHP S V+P  P G    P L V  + +  ++      C+ +  +P  + 
Sbjct: 140 DTVISDSPTSPHPPSFVQPHPPYGIFAAPILDVRVLTNPGAVKRTYNLCLDISKYPLLEG 199

Query: 261 LSFVLGISLGSTLLPSAPDR*HISNTASILNHSFFTKRFI 142
             + +G S G     S  +  H+++   I  H  +  + +
Sbjct: 200 KDWKIGGSFGIMPPNSDAEVLHLAHLLKIPQHELYVTKVL 239


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 461 SVL*QEQHLIPSVHIVTYSPILYQKSNLHHQLVQ 360
           +VL ++   +P +  +T SP   +K NL+H+L Q
Sbjct: 169 AVLSKKHFTLPRIFGMTASPFTGKKGNLYHRLYQ 202


>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 601 NFFSFRGTHQCHLMDRIRCLFPFFKPLYDL 512
           NFF  RG H+C  ++RI   +   K  Y++
Sbjct: 116 NFFILRGNHECASINRIYGFYDECKRRYNI 145


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 311  IRRDITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVL 436
            IR  +TSI +   RK FV   DE L + +  GC++     +L
Sbjct: 1317 IRNRLTSIRFIVNRKFFVCFKDETLPNVEIEGCLIEKSNAIL 1358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,319,588
Number of Sequences: 5004
Number of extensions: 92946
Number of successful extensions: 212
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 677627698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)