Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_I24
         (1252 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0216 + 15495395-15495566,15495648-15495733,15495824-154958...    87   3e-17
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522...    85   1e-16

>03_03_0216 +
           15495395-15495566,15495648-15495733,15495824-15495874,
           15496005-15496390,15496760-15496898,15497540-15497595,
           15497712-15497782,15497876-15498081
          Length = 388

 Score = 87.0 bits (206), Expect = 3e-17
 Identities = 49/135 (36%), Positives = 65/135 (48%), Gaps = 12/135 (8%)
 Frame = +2

Query: 251 TKESIWVLGKKYS-AIQDLDR----------IRRDITSIIWCTYRKGFVPIGDEGLTSDK 397
           T   +W LGK Y  + ++L               D +S IW TYRKGF  I D   TSD 
Sbjct: 12  TSSDVWFLGKCYKLSSEELSNSSDCESGNAAFLEDFSSRIWITYRKGFDAISDSKYTSDV 71

Query: 398 GWGCMLRCGQMVLGVALVRVHLSVDW-VWSPETRDPTYLKIIQRFEERKQAPYSIHQVAL 574
            WGCM+R  QM++  AL+  HL   W   S +   P Y+ I+  F + +   +SIH +  
Sbjct: 72  NWGCMVRSSQMLVAQALIFHHLGRSWRKPSQKPYSPEYIGILHMFGDSEACAFSIHNLLQ 131

Query: 575 MGASEGKEVGQWFGP 619
            G S G   G W GP
Sbjct: 132 AGKSYGLAAGSWVGP 146


>04_04_1624 -
           34849385-34849410,34849748-34851052,34852121-34852294,
           34852386-34852456,34852563-34852618,34853047-34853185,
           34853310-34853695,34853801-34853851,34853936-34854021,
           34854112-34854553,34856241-34856315,34856457-34856593,
           34856679-34856838,34856917-34857012,34857093-34857247,
           34857900-34858032
          Length = 1163

 Score = 85.0 bits (201), Expect = 1e-16
 Identities = 49/135 (36%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
 Frame = +2

Query: 251 TKESIWVLGKKYS-----AIQDLDR------IRRDITSIIWCTYRKGFVPIGDEGLTSDK 397
           T   +W LGK Y      +  D D          D +S IW TYR+GF  I D   TSD 
Sbjct: 354 TSSDVWFLGKCYKLSSEESSSDSDSESGHATFLEDFSSRIWITYRRGFDAISDSKYTSDV 413

Query: 398 GWGCMLRCGQMVLGVALVRVHLSVDWVWSPE-TRDPTYLKIIQRFEERKQAPYSIHQVAL 574
            WGCM+R  QM++  AL+  HL   W    E   +P Y+ I+  F + +   +SIH +  
Sbjct: 414 NWGCMVRSSQMLVAQALIFHHLGRSWRRPLEKPYNPEYIGILHMFGDSEACAFSIHNLLQ 473

Query: 575 MGASEGKEVGQWFGP 619
            G S G   G W GP
Sbjct: 474 AGNSYGLAAGSWVGP 488


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,287,891
Number of Sequences: 37544
Number of extensions: 504290
Number of successful extensions: 960
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3864364464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)