Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_I21
         (1223 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   5.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   5.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   5.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   7.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   7.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   9.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   9.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   9.5  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +3

Query: 759 GMALVGLAFSVAFIVGPLCGAWFAKTSDITNGPWGERPALYALXLSIANIALVAFGLP 932
           G+A++     +  +VG  C  W   TS     P      ++ + L+I +I ++AF +P
Sbjct: 59  GLAIIYSMLLIMSLVGNCCVIWIFSTSKSLRTP----SNMFIVSLAIFDI-IMAFEMP 111


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +3

Query: 759 GMALVGLAFSVAFIVGPLCGAWFAKTSDITNGPWGERPALYALXLSIANIALVAFGLP 932
           G+A++     +  +VG  C  W   TS     P      ++ + L+I +I ++AF +P
Sbjct: 59  GLAIIYSMLLIMSLVGNCCVIWIFSTSKSLRTP----SNMFIVSLAIFDI-IMAFEMP 111


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 264 NYKNEDTRTDAKTIAFVFLSLLLDLFAFTMILPLLPS 374
           NY+N D R + K I   +L   +D F    +  L  S
Sbjct: 202 NYRNSDVREEMKNIMKFWLDKGIDGFRIDAVPHLFES 238


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -2

Query: 112 TLKKKIQTNFHQFHPNVRHHITEHI 38
           T++ K +T ++ +HP+ +    EH+
Sbjct: 380 TVRGKEKTCYYPYHPSTQEDSEEHL 404


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -2

Query: 112 TLKKKIQTNFHQFHPNVRHHITEHI 38
           T++ K +T ++ +HP+ +    EH+
Sbjct: 380 TVRGKEKTCYYPYHPSTQEDSEEHL 404


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 132 KYKNLSVRALFSPGSSTIMLRHEGNAIVRERKGPTELPNE-DRKKNYKNEDTRTDAKT 302
           +YK + +  +  P SST     EG    + ++  + + NE + + N  +  T+   K+
Sbjct: 187 RYKQVEISQMTEPSSSTKSYVLEGPRNGKRKRKSSTIENESETESNASSTKTKMRRKS 244


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 364 SGRIIVNAKRSNNNDKNTN 308
           +G    NA  +NNN+ N N
Sbjct: 230 AGNANTNASNNNNNNNNNN 248


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
 Frame = -2

Query: 379  IKDGNSGR----IIVNAKRSNNNDKNTNAM 302
            +KD  +G+    +  + + S NNDK+TNA+
Sbjct: 976  VKDQKNGKPPSVVSRSTQTSANNDKDTNAV 1005


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 336,429
Number of Sequences: 438
Number of extensions: 7494
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41661861
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)