Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_I20
         (1254 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    28   3.1  
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    27   5.4  
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   9.5  

>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -3

Query: 160 GCSEKSWS-VEEELLCVGIRTLLQTARGAVTSATSEPS 50
           GC   S++ VE E L +G++ +  ++  A TSA+ EPS
Sbjct: 393 GCVNISFNYVEGESLLMGLKNIALSSGSACTSASLEPS 430


>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 580 NNVNSFE*SYYHRINYDV 527
           NN++ F  SYYHR++ DV
Sbjct: 182 NNLSVFRASYYHRVSSDV 199


>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 508 WLSTAFLRHNLFYDNTIIQSCLHCLVVSYKYL 603
           WL   F  HNLF  +      LHC +++ +Y+
Sbjct: 121 WLKVIFTEHNLFTKDA-RPLTLHCTLLNSRYI 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,425,110
Number of Sequences: 5004
Number of extensions: 91601
Number of successful extensions: 232
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 679614876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)