Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_I20
         (1254 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50523-1|AAC50874.1|  245|Homo sapiens unknown protein.                47   2e-04
BT006898-1|AAP35544.1|  300|Homo sapiens actin related protein 2...    47   2e-04
BC000590-1|AAH00590.1|  300|Homo sapiens actin related protein 2...    47   2e-04
AF279893-1|AAK07550.1|  200|Homo sapiens PNAS-139 protein.             47   2e-04
AF006085-1|AAB64190.1|  300|Homo sapiens p34-Arc protein.              47   2e-04
AC097483-2|AAX93213.1|  300|Homo sapiens unknown protein.              47   2e-04
U53174-1|AAB39928.1|  391|Homo sapiens cell cycle checkpoint con...    33   2.9  
CR536508-1|CAG38746.1|  391|Homo sapiens RAD9A protein.                33   2.9  
BC014848-1|AAH14848.1|  391|Homo sapiens RAD9 homolog A (S. pomb...    33   2.9  
AY766122-1|AAU89725.1|  391|Homo sapiens RAD9 homolog A (S. pomb...    33   2.9  

>U50523-1|AAC50874.1|  245|Homo sapiens unknown protein.
          Length = 245

 Score = 46.8 bits (106), Expect = 2e-04
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = -1

Query: 162 EDVVKKVGLLKRNCFASVFERYFRLQEE 79
           + +V + G+LKRNCFASVFE+YF+ QEE
Sbjct: 52  DSIVHQAGMLKRNCFASVFEKYFQFQEE 79


>BT006898-1|AAP35544.1|  300|Homo sapiens actin related protein 2/3
           complex, subunit 2, 34kDa protein.
          Length = 300

 Score = 46.8 bits (106), Expect = 2e-04
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = -1

Query: 162 EDVVKKVGLLKRNCFASVFERYFRLQEE 79
           + +V + G+LKRNCFASVFE+YF+ QEE
Sbjct: 107 DSIVHQAGMLKRNCFASVFEKYFQFQEE 134


>BC000590-1|AAH00590.1|  300|Homo sapiens actin related protein 2/3
           complex, subunit 2, 34kDa protein.
          Length = 300

 Score = 46.8 bits (106), Expect = 2e-04
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = -1

Query: 162 EDVVKKVGLLKRNCFASVFERYFRLQEE 79
           + +V + G+LKRNCFASVFE+YF+ QEE
Sbjct: 107 DSIVHQAGMLKRNCFASVFEKYFQFQEE 134


>AF279893-1|AAK07550.1|  200|Homo sapiens PNAS-139 protein.
          Length = 200

 Score = 46.8 bits (106), Expect = 2e-04
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = -1

Query: 162 EDVVKKVGLLKRNCFASVFERYFRLQEE 79
           + +V + G+LKRNCFASVFE+YF+ QEE
Sbjct: 52  DSIVHQAGMLKRNCFASVFEKYFQFQEE 79


>AF006085-1|AAB64190.1|  300|Homo sapiens p34-Arc protein.
          Length = 300

 Score = 46.8 bits (106), Expect = 2e-04
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = -1

Query: 162 EDVVKKVGLLKRNCFASVFERYFRLQEE 79
           + +V + G+LKRNCFASVFE+YF+ QEE
Sbjct: 107 DSIVHQAGMLKRNCFASVFEKYFQFQEE 134


>AC097483-2|AAX93213.1|  300|Homo sapiens unknown protein.
          Length = 300

 Score = 46.8 bits (106), Expect = 2e-04
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = -1

Query: 162 EDVVKKVGLLKRNCFASVFERYFRLQEE 79
           + +V + G+LKRNCFASVFE+YF+ QEE
Sbjct: 107 DSIVHQAGMLKRNCFASVFEKYFQFQEE 134


>U53174-1|AAB39928.1|  391|Homo sapiens cell cycle checkpoint
           control protein protein.
          Length = 391

 Score = 32.7 bits (71), Expect = 2.9
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 340 LWKSFVSIY*RNISLEKIVRDCGISTPPRSHRIKIRIH 453
           L KSF+S++     LEK V  C IS   RS R+ +++H
Sbjct: 76  LMKSFLSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLH 113


>CR536508-1|CAG38746.1|  391|Homo sapiens RAD9A protein.
          Length = 391

 Score = 32.7 bits (71), Expect = 2.9
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 340 LWKSFVSIY*RNISLEKIVRDCGISTPPRSHRIKIRIH 453
           L KSF+S++     LEK V  C IS   RS R+ +++H
Sbjct: 76  LMKSFLSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLH 113


>BC014848-1|AAH14848.1|  391|Homo sapiens RAD9 homolog A (S. pombe)
           protein.
          Length = 391

 Score = 32.7 bits (71), Expect = 2.9
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 340 LWKSFVSIY*RNISLEKIVRDCGISTPPRSHRIKIRIH 453
           L KSF+S++     LEK V  C IS   RS R+ +++H
Sbjct: 76  LMKSFLSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLH 113


>AY766122-1|AAU89725.1|  391|Homo sapiens RAD9 homolog A (S. pombe)
           protein.
          Length = 391

 Score = 32.7 bits (71), Expect = 2.9
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 340 LWKSFVSIY*RNISLEKIVRDCGISTPPRSHRIKIRIH 453
           L KSF+S++     LEK V  C IS   RS R+ +++H
Sbjct: 76  LMKSFLSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLH 113


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,015,871
Number of Sequences: 237096
Number of extensions: 2971049
Number of successful extensions: 8294
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8294
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17890024750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)