Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_I20
         (1254 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006815-2|AAL32261.1|  301|Caenorhabditis elegans Hypothetical ...    42   0.001
Z67884-2|CAA91808.1|  429|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U23172-6|AAV58869.1|  484|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U23172-5|AAC46527.1|  510|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U23172-4|AAL02494.1|  521|Caenorhabditis elegans Hypothetical pr...    29   5.2  
AC024211-2|AAF36064.2|  152|Caenorhabditis elegans Hypothetical ...    29   6.9  

>AC006815-2|AAL32261.1|  301|Caenorhabditis elegans Hypothetical
           protein Y6D11A.2 protein.
          Length = 301

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = -1

Query: 159 DVVKKVGLLKRNCFASVFERYFRLQE 82
           D+V+    LKRNCFASVFE+YF  QE
Sbjct: 109 DLVQAASALKRNCFASVFEKYFEFQE 134


>Z67884-2|CAA91808.1|  429|Caenorhabditis elegans Hypothetical
           protein T14G8.4 protein.
          Length = 429

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 556 SYYHRINYDVRMQLITILNLFFFGS--RHCQNHKTPGVF 446
           +Y    ++D R+Q +T   LFF G     C+NH  P V+
Sbjct: 137 AYMELSSFDHRLQPLTPTFLFFMGHIIEKCRNHPNPAVY 175


>U23172-6|AAV58869.1|  484|Caenorhabditis elegans Hypothetical
           protein F25B5.6c protein.
          Length = 484

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 226 LLYTGYNISLLLDMXHIPEXLGGCSEKSWSVEE 128
           ++ T  N++ LLD  H P+ +  CSE  W+ EE
Sbjct: 319 IVSTDRNVTYLLDGAHTPKSMEACSE--WAAEE 349


>U23172-5|AAC46527.1|  510|Caenorhabditis elegans Hypothetical
           protein F25B5.6a protein.
          Length = 510

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 226 LLYTGYNISLLLDMXHIPEXLGGCSEKSWSVEE 128
           ++ T  N++ LLD  H P+ +  CSE  W+ EE
Sbjct: 345 IVSTDRNVTYLLDGAHTPKSMEACSE--WAAEE 375


>U23172-4|AAL02494.1|  521|Caenorhabditis elegans Hypothetical
           protein F25B5.6b protein.
          Length = 521

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 226 LLYTGYNISLLLDMXHIPEXLGGCSEKSWSVEE 128
           ++ T  N++ LLD  H P+ +  CSE  W+ EE
Sbjct: 356 IVSTDRNVTYLLDGAHTPKSMEACSE--WAAEE 386


>AC024211-2|AAF36064.2|  152|Caenorhabditis elegans Hypothetical
           protein Y76B12C.3 protein.
          Length = 152

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 12/65 (18%), Positives = 32/65 (49%)
 Frame = +1

Query: 541 FYDNTIIQSCLHCLVVSYKYLHSKQVSALITIHKFSFHKHTQIKHVQHYLINFKAKFGKT 720
           ++  T++  CL C +   ++ H K  +A++ + + +  +  Q++   H   +   +FG  
Sbjct: 50  YHLETLLTDCLQCCIKEEEFKHEKYPTAILEVCECNLARFPQVQAFVHK--DMARQFGGK 107

Query: 721 ISLIH 735
           + + H
Sbjct: 108 VKVKH 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,158,672
Number of Sequences: 27780
Number of extensions: 505477
Number of successful extensions: 1269
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3485108972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)