Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_I20
         (1254 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   2.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   7.4  

>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +1

Query: 709 FGKTISLIHTHNEI*M*SLL-MKNIIFILLFKQISYYFNQ--PIFYLNFFSLFCHFFNL 876
           F ++  ++H    + +  L  + +++ +L   ++  Y +Q   +++LN  S+F   FNL
Sbjct: 192 FSESFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYFLNMASVFMRIFNL 250


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 526 LRHNLFYDNTIIQSCLHCLVVSYKYLHSKQV 618
           LR    +D+   +    C+V ++ YLHS+ +
Sbjct: 457 LRDKGHFDDGTTRFYTACVVEAFDYLHSRNI 487


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 299,556
Number of Sequences: 438
Number of extensions: 6447
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42862491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)