Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_I17
         (1227 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    58   2e-09
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    29   1.3  
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    28   3.0  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   3.0  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   7.0  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   9.3  
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   9.3  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    26   9.3  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 30/115 (26%), Positives = 60/115 (52%)
 Frame = +3

Query: 102 LDRVFLRLGNADTDEQLESCLNRFLPPVILKLSSSHEQVRTKVMELLVHVNKRVKCRAEV 281
           L+   L+L  A++++  +S ++ FL P++LKL S HE VR K + +  H+  R+   A+ 
Sbjct: 9   LNNAELKLALAESEDSFQSLVSVFLCPILLKLDSPHESVRNKTISIANHIMTRLNNNAQA 68

Query: 282 KLPVQTLLQLYMDRXXXXXXXXXXXXYITMGFPRLPHEQQIILAPSLIEAMDNKP 446
            LP++ L+  Y++             +I++G  R+P  + + L    +  ++  P
Sbjct: 69  ILPLEALVSQYVE-ANQPLRKRFLLAFISIGEKRIPCSENLALLQICLNHVNEYP 122


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 19/75 (25%), Positives = 38/75 (50%)
 Frame = +1

Query: 529 KPKLATLIVKFATDILLLPYRALPNQGETEFQVPPGMSMKSYKRLVEKNLLNPNQLEQIK 708
           K +   L+VK +     +  R  P +G++      G + +++ R   K  ++PN + ++K
Sbjct: 155 KEQYDLLVVKLSKLYDFVRTRGSPIKGDSA----AGGTQQNFVRQTTKYWVHPNNVTELK 210

Query: 709 LSIVKFISKDVFNDN 753
           + I+K +   VFN N
Sbjct: 211 IYILKHLPVLVFNPN 225


>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = +1

Query: 796 FSVANHANSPLIRVNSSVDWSQPSV 870
           +SV NH N+P+++ NS++  +QPS+
Sbjct: 27  YSVNNHVNNPIVKQNSTL--TQPSL 49


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = +1

Query: 796 FSVANHANSPLIRVNSSVDWSQPSV 870
           +SV NH N+P+++ NS++  +QPS+
Sbjct: 27  YSVNNHVNNPIVKQNSTL--TQPSL 49


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +3

Query: 162  LNRFLPPVILKLSS----SHEQVRTKVMELLVHVNKRVKCRAEVKLPVQTLLQLYMD 320
            L+ FLP +I KLS     SH QVR    + L+     V    E++  V TLL+   D
Sbjct: 1516 LSVFLPTIIPKLSEVLTDSHSQVRNTANKSLLRFGD-VISNPEIQTLVPTLLKALSD 1571


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +2

Query: 383 ITP*TTNYFSSITDRSNG 436
           I P TTNY SSI + SNG
Sbjct: 230 IRPNTTNYRSSIQENSNG 247


>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 310 SCRSVCTGNFTSARHFTLLFTCTSSSITLVRTC 212
           +CR   TGN + A+ F +   C       VR C
Sbjct: 176 TCRLALTGNISEAKAFIVEIMCAGVVTNCVRWC 208


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 781 AADSRFSVANHANSPLIRVNSSVDWSQPSVVFPLYSLY 894
           A DS +++ NH +   +R+N +VD S    + P   L+
Sbjct: 492 AVDSFYNIYNHLDPVAMRLNPTVDLSFSKGIHPTRILF 529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,410,909
Number of Sequences: 5004
Number of extensions: 88021
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)