Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_I17
         (1227 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    56   4e-08
Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical pr...    32   0.95 
AF022980-11|AAG24189.1|  330|Caenorhabditis elegans Serpentine r...    30   3.8  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    29   5.1  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    29   5.1  
U39849-2|AAN63462.2|  370|Caenorhabditis elegans Hypothetical pr...    29   8.9  

>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical
           protein D2045.2 protein.
          Length = 1792

 Score = 56.4 bits (130), Expect = 4e-08
 Identities = 35/115 (30%), Positives = 57/115 (49%)
 Frame = +3

Query: 102 LDRVFLRLGNADTDEQLESCLNRFLPPVILKLSSSHEQVRTKVMELLVHVNKRVKCRAEV 281
           ++RVFLRL NA++D +L++  +R L  V+       E ++  V E L H NK VK    +
Sbjct: 7   VERVFLRLVNANSDAKLQTITDRHLCDVLEFAGRKQEHIQL-VTEFLTHFNKVVKSNLAI 65

Query: 282 KLPVQTLLQLYMDRXXXXXXXXXXXXYITMGFPRLPHEQQIILAPSLIEAMDNKP 446
           +LPV  LL+L+  +            Y+ M   R+   +Q+   P  + +   KP
Sbjct: 66  RLPVPRLLELF--QGPSAISSNFSLIYLKMAKDRIQAAEQLEFLPVYLTSFSKKP 118


>Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical
           protein F32D8.2 protein.
          Length = 568

 Score = 31.9 bits (69), Expect = 0.95
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
 Frame = +1

Query: 496 EIKETDLN--LKEKPKLATLIVK---FATDILLLPYRALPNQGETEFQVPPGMSMKSYKR 660
           EIKE D +  +K KP+    +V+     T++  LPY   PN+ E  F + P  S    K+
Sbjct: 38  EIKEFDKDGGIKYKPEFVYSLVETRELLTNVCKLPYIFFPNEDEDVFGLTPDKS----KQ 93

Query: 661 LVEKNLLNPNQL-EQIKLSIVKFISKDVFNDNDV 759
            + +     N+L E++ LS   +++    N ND+
Sbjct: 94  HIVRGECKINELNEKVDLSSDGYLTLRSKNTNDL 127


>AF022980-11|AAG24189.1|  330|Caenorhabditis elegans Serpentine
           receptor, class j protein49 protein.
          Length = 330

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 286 YLYKHFCNFTWIVIPTVL*LIFPSFTLQWG 375
           YL + FC FT++V P  + LIF   + Q+G
Sbjct: 9   YLPRIFCGFTYVVNPVFIYLIFTEKSSQFG 38


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 28/95 (29%), Positives = 45/95 (47%)
 Frame = +1

Query: 658  RLVEKNLLNPNQLEQIKLSIVKFISKDVFNDNDVLLPLIVAAADSRFSVANHANSPLIRV 837
            R V ++L    Q EQ KLS   F+     +  DV     V AA   F +++ +   L+ +
Sbjct: 2246 RTVTESLSTDIQKEQQKLSTHHFVK---LSTRDV-----VQAA---FRISSESVDHLLTL 2294

Query: 838  NSSVDWSQPSVVFPLYSLYLGTWGRLQSASRRSQG 942
               +DWS+  +V P+YS        L ++S +S G
Sbjct: 2295 VEKMDWSKIDLVEPVYSNISSNVQALATSSSQSSG 2329


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 28/95 (29%), Positives = 45/95 (47%)
 Frame = +1

Query: 658  RLVEKNLLNPNQLEQIKLSIVKFISKDVFNDNDVLLPLIVAAADSRFSVANHANSPLIRV 837
            R V ++L    Q EQ KLS   F+     +  DV     V AA   F +++ +   L+ +
Sbjct: 2246 RTVTESLSTDIQKEQQKLSTHHFVK---LSTRDV-----VQAA---FRISSESVDHLLTL 2294

Query: 838  NSSVDWSQPSVVFPLYSLYLGTWGRLQSASRRSQG 942
               +DWS+  +V P+YS        L ++S +S G
Sbjct: 2295 VEKMDWSKIDLVEPVYSNISSNVQALATSSSQSSG 2329


>U39849-2|AAN63462.2|  370|Caenorhabditis elegans Hypothetical
           protein C06A8.8a protein.
          Length = 370

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 457 QDGLLMLVMPLLGEIKETDLNLKEKPKLATLIVKFATDILLLPYRALPNQGETE 618
           Q  +L +++   GEI   D +LK++PK   +        +LLP ++ P   ET+
Sbjct: 144 QVSILSVIISGAGEILPFDSHLKDEPKQTEMSYIELDKGILLPLKSKPKMRETK 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,686,174
Number of Sequences: 27780
Number of extensions: 504841
Number of successful extensions: 1107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3391198850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)