Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_I17
         (1227 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.11 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    25   1.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   5.4  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              22   9.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   9.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 0.11
 Identities = 10/39 (25%), Positives = 24/39 (61%)
 Frame = +1

Query: 583 PYRALPNQGETEFQVPPGMSMKSYKRLVEKNLLNPNQLE 699
           P  A P+Q  ++  + P   +   ++L+++++L+P QL+
Sbjct: 51  PPGAPPSQNPSQMMISPASGIHQMQQLLQQHILSPTQLQ 89


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 308 LQKCLYR*FYFSTTFHPLIY 249
           L  CLY   YFSTT +P++Y
Sbjct: 312 LSGCLY---YFSTTINPILY 328


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 308 LQKCLYR*FYFSTTFHPLIY 249
           L  CLY   YFSTT +P++Y
Sbjct: 300 LTGCLY---YFSTTINPILY 316


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 149 LLISISITESQKDSIQVTTSHLSNHFHSQDTSILGXFIGIXRIPY 15
           +L  +SI  +++    + T   +N F S DTSI      +  +PY
Sbjct: 836 VLSDLSIKRTERSDSALFTCVATNAFGSDDTSINMIVQEVPEVPY 880


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/51 (21%), Positives = 24/51 (47%)
 Frame = +1

Query: 745 NDNDVLLPLIVAAADSRFSVANHANSPLIRVNSSVDWSQPSVVFPLYSLYL 897
           +D+ +L P    A ++   +A H  +  + + +  DW   ++V     LY+
Sbjct: 435 SDSVLLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYI 485


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 365 NVNDGKINYKTVGITIHVK 309
           +VNDGKIN +   + ++++
Sbjct: 46  DVNDGKINIEDENVQLYIE 64


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = -3

Query: 460 LDVPWGLLSIASISDGAKIICC 395
           + V W ++ + ++ + A  ICC
Sbjct: 198 ISVEWDIIKVPAVRNEAFYICC 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 303,817
Number of Sequences: 438
Number of extensions: 6293
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41781924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)