Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_I16
         (1293 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    29   0.22 
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    25   3.6  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    25   3.6  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    25   6.3  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            25   6.3  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    24   8.4  

>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 29.5 bits (63), Expect = 0.22
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 489 TRFRDGSQIVHQIGLGHTNTGIDDRKSALVLVG 391
           T+ R+GS I HQ      N  + DR+ +L+L G
Sbjct: 55  TQNRNGSPINHQGNAASANVAVADRQQSLILAG 87


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 655 FTVRPDSGEPLGRGTKIVL 711
           FT+ PDSGE L  G  I+L
Sbjct: 236 FTLPPDSGEKLSLGVTILL 254


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 655 FTVRPDSGEPLGRGTKIVL 711
           FT+ PDSGE L  G  I+L
Sbjct: 268 FTLPPDSGEKLSLGVTILL 286


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 655 FTVRPDSGEPLGRGTKIVL 711
           FT+ PDSGE L  G  I+L
Sbjct: 253 FTLPPDSGEKLTLGVTILL 271


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 253 TFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELYIK 384
           TFY  KE+ + +L  N   AL+   +E       LDS KEL+++
Sbjct: 835 TFYGLKELEILQLDHNLLTALNGFEFEG------LDSLKELFLQ 872


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1049

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +2

Query: 629  CGNLLQEARSQSAQTAVSPLVEVQR--SSFTSKRTWQNSWKNTKSKR 763
            C  L +++++     A     E  +  S   S R WQN W N+ + R
Sbjct: 876  CITLEEDSKNFRKSRAGESFTETAKKASRQASMRQWQNEWSNSLNGR 922


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,030,687
Number of Sequences: 2352
Number of extensions: 21393
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 148783908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)