Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_I13
         (1302 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1240 - 28612250-28613704                                         33   0.65 
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784           32   1.1  
12_02_0305 - 17235832-17236379,17237345-17237444                       30   3.5  
08_01_0112 - 885965-886010,887084-887145,887908-887976,888076-88...    30   3.5  
04_04_0140 - 23073032-23073130,23073270-23073338,23073448-230735...    30   4.6  
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    29   6.1  
01_06_0640 + 30779457-30779623,30779707-30779828,30779959-307800...    29   6.1  

>06_03_1240 - 28612250-28613704
          Length = 484

 Score = 32.7 bits (71), Expect = 0.65
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +2

Query: 278 RRHNVLKWRLDAAAPPT--KLLCEGRRSLLHSWPLSLQRFARSWSAALLCASQSTCTYAT 451
           RRH VL +RL  + PPT   LL     ++L S  LS      S+ AA+ C   +   +A 
Sbjct: 97  RRHAVLSFRLLDSLPPTHPHLLSTPALAVLLSTALSASAPGASFDAAVTCFDSAARVWAR 156

Query: 452 APRQ 463
           A R+
Sbjct: 157 AGRE 160


>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
          Length = 394

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 18/37 (48%), Positives = 20/37 (54%)
 Frame = +2

Query: 566 PGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRI 676
           P   PA S A +  AT SPR A   +PPW T  PP I
Sbjct: 91  PMPTPAASSA-LAPATSSPRPASPPTPPWTTAPPPGI 126


>12_02_0305 - 17235832-17236379,17237345-17237444
          Length = 215

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 542 PGQTRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRIT-RRQCPTDSLVA 712
           P   R + P ++   + AP+   +  P +AP++ P    T PP  +   QCP ++++A
Sbjct: 83  PSPRRASPPSVSVEPTPAPVIAPSPPPVVAPSQPPTIAPTQPPTPSGGSQCPRENVIA 140


>08_01_0112 - 885965-886010,887084-887145,887908-887976,888076-888123,
            888205-888264,888392-888504,888578-888650,888725-888769,
            889382-889527,890782-890842,891913-892056,892164-892400
          Length = 367

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 1040 AEHFLPHQXVAAISTAVAYYXVVSRLVEYDDVXRVAGPXP 921
            AE F+P    AA  TA AYY   +    +  V  +AGP P
Sbjct: 39   AEEFVPPSLAAASPTAYAYYPTPTPSHVFPAVDGLAGPRP 78


>04_04_0140 -
           23073032-23073130,23073270-23073338,23073448-23073539,
           23073637-23074550,23074646-23074779,23075003-23075058,
           23077556-23077646
          Length = 484

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -2

Query: 422 HRAALRSTNARTFGVRVASCGEGFVDPRIAVWWAVRLHPI 303
           HR+ L    +      V   GEG  +PR A WW    H +
Sbjct: 35  HRSDLSMVTSSVLPKVVDDAGEGEANPRRAKWWYATFHSV 74


>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 620 PRLAPARSPPWGTTSPPRITRRQCPTD 700
           P++ P  SPP  T SPP IT    P D
Sbjct: 616 PKITPYPSPPEVTPSPPEITPYPSPPD 642


>01_06_0640 +
           30779457-30779623,30779707-30779828,30779959-30780014,
           30780147-30780254
          Length = 150

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = +2

Query: 545 GQTRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRQ 688
           G  R+ L GL  A S     +   +P  A ARSP     S PR TRR+
Sbjct: 6   GGARRALAGLRSASSSRAFSQP--APAAAAARSPELAAFSLPRSTRRR 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,404,779
Number of Sequences: 37544
Number of extensions: 706399
Number of successful extensions: 2302
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2299
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4062238548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)