Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_I10
         (1373 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    37   0.043
11_01_0553 - 4368233-4368320,4368427-4368514,4368595-4368668,436...    30   3.7  
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776     30   4.9  
07_03_1136 + 24218601-24218734,24218769-24219906                       29   6.5  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 36.7 bits (81), Expect = 0.043
 Identities = 40/169 (23%), Positives = 45/169 (26%), Gaps = 4/169 (2%)
 Frame = +1

Query: 658  GXGXXPRXPPPXKTXXXXXPXGGGXXPXXGXKXXXVPPKXXXKGXPFSXPXRXXXXXGVX 837
            G    P  PPP +         GG  P        +PP     G   + P          
Sbjct: 1057 GGAPSPPSPPPPQRENTSVGIQGGIPPLP----PPLPPTLGDYGV--APPPPSIGAGAPP 1110

Query: 838  PXXKXGXFXXTPPXXPXXGXVXR---PPPXXGXGXRXXPHXPPRGXXXGKKXXXNPXXGK 1008
            P    G     PP  P  G       P P    G    P  PP G   G      P   +
Sbjct: 1111 PPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFR 1170

Query: 1009 KXXXSPXXGGXLFXGXSXXXGXGG-GAPXXNXGAPQXGXKKKXPXXXPP 1152
                 P   G +        G GG G P    GAP        P   PP
Sbjct: 1171 GGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPP 1219



 Score = 29.5 bits (63), Expect = 6.5
 Identities = 39/148 (26%), Positives = 42/148 (28%), Gaps = 4/148 (2%)
 Frame = -1

Query: 1103 PXLXXGAPPPNPXXXXXPXKRXPPXXGEXXXFXPXXGXXNXFFPXXXPRGGKWGXXRXPX 924
            P +  GAPPP P          PP         P  G      P   P     G    P 
Sbjct: 1102 PSIGAGAPPPPPPPGGITGVPPPP---------PIGGLGGHQAPPAPPLPEGIGGVPPPP 1152

Query: 923  P--XXGGGRXTXPXXGXXGGVXXKXPXFXXGXTPXFXXXRXGXEKGXPXXXXLGGTXXXL 750
            P    GG     P  G  GG     P    G  P     R     G P     G     +
Sbjct: 1153 PVGGLGGPPAPPPPAGFRGGT--PPPNAHGGVAPPPPPPRGHGGVGGPPTPP-GAPAPPM 1209

Query: 749  XP-XXGXXPPPXGXXXXXVXXGG-GXLG 672
             P   G  PPP G        GG G +G
Sbjct: 1210 PPGVPGGPPPPPGGRGLPAPPGGRGVVG 1237


>11_01_0553 -
           4368233-4368320,4368427-4368514,4368595-4368668,
           4369000-4369160,4369233-4369322,4369406-4369480,
           4369569-4369640,4369719-4369891,4369964-4370078,
           4370274-4370387,4370582-4370661,4370755-4370842,
           4370941-4370997,4371111-4371176,4371254-4371349,
           4371459-4371566,4371941-4372039,4372108-4372227,
           4372399-4372437,4372940-4373026,4373276-4373347,
           4373443-4373509,4374455-4374546,4374631-4374708,
           4374785-4374922,4375029-4375164,4375306-4375468,
           4375690-4375849,4375950-4376056,4376149-4376259,
           4377850-4378159
          Length = 1107

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 588 GGXXGXKPXAPPPXKXXKKSXXXXXGGXPXGPPP 689
           GG  G +  APPP      +     GG P  PPP
Sbjct: 4   GGRGGKRRGAPPPGPSGAAAKRAHPGGTPQPPPP 37


>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
          Length = 429

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 28/117 (23%), Positives = 31/117 (26%), Gaps = 6/117 (5%)
 Frame = +1

Query: 673  PRXPPPXKTXXXXXPXGGGXXPXXGXKXXXVPPKXXXKGXPFSXPXRXXXXX----GVXP 840
            P  PP  +      P  G   P  G     + P       PF  P           G  P
Sbjct: 195  PTPPPTPRGFPPPLPSPGAGAPRGGSATPAMIPGHPGAFYPFPPPSLPGVGPPRGGGAIP 254

Query: 841  XXKXGX--FXXTPPXXPXXGXVXRPPPXXGXGXRXXPHXPPRGXXXGKKXXXNPXXG 1005
                G       PP  P  G + RPPP         P   P     G     NP  G
Sbjct: 255  GLPAGFPFLLRPPPPLPVPGVICRPPPSPPY-FAPPPRATPTVSLAGPPPGFNPKRG 310


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 39/152 (25%), Positives = 40/152 (26%), Gaps = 6/152 (3%)
 Frame = +1

Query: 682  PPPXKTXXXXXPXGGGXXPXXGXKXXXVPPKXXXKGXPFSXPXRXXXXXGVXPXXKXGXF 861
            P P        P GGG  P         PP     G P S P       G  P    G  
Sbjct: 80   PRPLPIKLLGLPPGGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGG 139

Query: 862  XXTPP-----XXPXXGXVXRPPPXXGXGXRXXPHXPPRGXXXGKKXXXNPXXGKKXXXSP 1026
                P          G + RPP   G G       PP G   G      P  G       
Sbjct: 140  GGGAPRRVLGGGGGGGALARPP---GGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPG 196

Query: 1027 XXGGXLFXGXSXXXGXG-GGAPXXNXGAPQXG 1119
               G    G     G G GGAP    G    G
Sbjct: 197  RAPGGGGGGGGLGGGGGEGGAPERVIGGGGGG 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.152    0.524 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,341,384
Number of Sequences: 37544
Number of extensions: 623334
Number of successful extensions: 1088
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4341590196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)