Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_I10
(1373 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 1.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 1.1
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 31 1.4
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 30 4.4
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 4.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 4.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 4.4
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +1
Query: 871 PPXXPXXGXVXRPPPXXGXGXRXXPHXPPRGXXXG 975
PP P G RPPP G P PP G G
Sbjct: 275 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPG 309
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +1
Query: 871 PPXXPXXGXVXRPPPXXGXGXRXXPHXPPRGXXXG 975
PP P G RPPP G P PP G G
Sbjct: 285 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPG 319
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 31.5 bits (68), Expect = 1.4
Identities = 41/180 (22%), Positives = 44/180 (24%), Gaps = 3/180 (1%)
Frame = +3
Query: 579 PKXGGXXGXKPXAPPPXKXXKKSXXXXXGGXPXGPPPXXNXXXXXXXXXXXXXXXXX*XX 758
P GG G + P G P G PP
Sbjct: 281 PPSGGPPGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGPPGPFDP--- 337
Query: 759 TGPPQXXXXGGPFFXXXAXXXKXXCXPPXEXGGFXXN-PPGXXXPXXRXXATPXXGXGXP 935
+G P GPF A P G PPG P A P G P
Sbjct: 338 SGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSG---APPSGGPPGP 394
Query: 936 XTPPFXPPGGXXXE--KXIXXPPXGXKXXXFSXGGGXPFXGXXXXXGVXGGXPXX*XXGP 1109
P PP G PP G F+ G P G G P GP
Sbjct: 395 FDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGP 454
Score = 31.5 bits (68), Expect = 1.4
Identities = 41/180 (22%), Positives = 44/180 (24%), Gaps = 3/180 (1%)
Frame = +3
Query: 579 PKXGGXXGXKPXAPPPXKXXKKSXXXXXGGXPXGPPPXXNXXXXXXXXXXXXXXXXX*XX 758
P GG G + P G P G PP
Sbjct: 326 PPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDP--- 382
Query: 759 TGPPQXXXXGGPFFXXXAXXXKXXCXPPXEXGGFXXN-PPGXXXPXXRXXATPXXGXGXP 935
+G P GPF A P G PPG P A P G P
Sbjct: 383 SGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSG---APPSGGPPGP 439
Query: 936 XTPPFXPPGGXXXE--KXIXXPPXGXKXXXFSXGGGXPFXGXXXXXGVXGGXPXX*XXGP 1109
P PP G PP G F+ G P G G P GP
Sbjct: 440 FNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGP 499
Score = 31.1 bits (67), Expect = 1.9
Identities = 41/180 (22%), Positives = 44/180 (24%), Gaps = 3/180 (1%)
Frame = +3
Query: 579 PKXGGXXGXKPXAPPPXKXXKKSXXXXXGGXPXGPPPXXNXXXXXXXXXXXXXXXXX*XX 758
P GG G + P G P G PP
Sbjct: 266 PPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNP--- 322
Query: 759 TGPPQXXXXGGPFFXXXAXXXKXXCXPPXEXGGFXXN-PPGXXXPXXRXXATPXXGXGXP 935
+G P GPF A P G PPG P A P G P
Sbjct: 323 SGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSG---APPSGGPPGP 379
Query: 936 XTPPFXPPGGXXXEKX--IXXPPXGXKXXXFSXGGGXPFXGXXXXXGVXGGXPXX*XXGP 1109
P PP G PP G F+ G P G G P GP
Sbjct: 380 FDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGP 439
Score = 31.1 bits (67), Expect = 1.9
Identities = 41/180 (22%), Positives = 43/180 (23%), Gaps = 3/180 (1%)
Frame = +3
Query: 579 PKXGGXXGXKPXAPPPXKXXKKSXXXXXGGXPXGPPPXXNXXXXXXXXXXXXXXXXX*XX 758
P GG G + P G P G PP
Sbjct: 341 PPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDP--- 397
Query: 759 TGPPQXXXXGGPFFXXXAXXXKXXCXPPXEXGGFXXN-PPGXXXPXXRXXATPXXGXGXP 935
+G P GPF A P G PPG P A P G P
Sbjct: 398 SGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSG---APPSGGPPGP 454
Query: 936 XTPPFXPPGGXXXE--KXIXXPPXGXKXXXFSXGGGXPFXGXXXXXGVXGGXPXX*XXGP 1109
P PP G PP G F G P G G P GP
Sbjct: 455 FNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGP 514
Score = 30.3 bits (65), Expect = 3.3
Identities = 25/94 (26%), Positives = 25/94 (26%), Gaps = 3/94 (3%)
Frame = +3
Query: 837 PPXEXGGFXXNPPGXXX-PXXRXXATPXXGXGXPXTPPFXPPGGXXXE--KXIXXPPXGX 1007
PP G P G P A P G P P PP G PP G
Sbjct: 181 PPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGAPPSGG 240
Query: 1008 KXXXFSXGGGXPFXGXXXXXGVXGGXPXX*XXGP 1109
F G P G G P GP
Sbjct: 241 PPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGP 274
Score = 29.5 bits (63), Expect = 5.8
Identities = 23/82 (28%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Frame = +3
Query: 870 PPGXXXPXXRXXATPXXGXGXPXTPPFXPPGGXXXE--KXIXXPPXGXKXXXFSXGGGXP 1043
PPG P A P G P P PP G PP G F G P
Sbjct: 166 PPGLFDPSG---APPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPP 222
Query: 1044 FXGXXXXXGVXGGXPXX*XXGP 1109
G G P GP
Sbjct: 223 SGGPPGPFNPSGAPPSGGPPGP 244
Score = 29.1 bits (62), Expect = 7.7
Identities = 41/185 (22%), Positives = 43/185 (23%), Gaps = 3/185 (1%)
Frame = +3
Query: 564 GKGXXPKXGGXXGXKPXAPPPXKXXKKSXXXXXGGXPXGPPPXXNXXXXXXXXXXXXXXX 743
G P GG G + P G P G PP
Sbjct: 186 GPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPF 245
Query: 744 XX*XXTGPPQXXXXGGPFFXXXAXXXKXXCXPPXEXGG-FXXNPPGXXXPXXRXXATPXX 920
+G P GPF A P G PPG P A P
Sbjct: 246 ---DPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDP---SGAPPSG 299
Query: 921 GXGXPXTPPFXPPGGXXXE--KXIXXPPXGXKXXXFSXGGGXPFXGXXXXXGVXGGXPXX 1094
G P P P G PP G F G P G G P
Sbjct: 300 GPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSG 359
Query: 1095 *XXGP 1109
GP
Sbjct: 360 GPPGP 364
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.9 bits (64), Expect = 4.4
Identities = 18/65 (27%), Positives = 20/65 (30%)
Frame = +2
Query: 683 PPXXKLXXXXXPXGGGRXPXXXLXXXXSPPKXXXRGXLFPXPXGXXKXXVXPPXXXGGXX 862
PP P GG P + PP G + P P PP G
Sbjct: 67 PPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSGLGVA 126
Query: 863 PXPPR 877
P PPR
Sbjct: 127 PQPPR 131
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 4.4
Identities = 25/112 (22%), Positives = 28/112 (25%), Gaps = 2/112 (1%)
Frame = +2
Query: 485 PPPPPRKXXXPQIGGXGXEXXFXXKGGXRPXPXKXXXXRXKTXGPAPXKXXKKIXXXXGG 664
PPPPP P + G G G P P T P P G
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPP-PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 295
Query: 665 GXXXGXPPXXK--LXXXXXPXGGGRXPXXXLXXXXSPPKXXXRGXLFPXPXG 814
PP P GG P PP+ + P G
Sbjct: 296 SPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTG 347
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 4.4
Identities = 25/112 (22%), Positives = 28/112 (25%), Gaps = 2/112 (1%)
Frame = +2
Query: 485 PPPPPRKXXXPQIGGXGXEXXFXXKGGXRPXPXKXXXXRXKTXGPAPXKXXKKIXXXXGG 664
PPPPP P + G G G P P T P P G
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPP-PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 316
Query: 665 GXXXGXPPXXK--LXXXXXPXGGGRXPXXXLXXXXSPPKXXXRGXLFPXPXG 814
PP P GG P PP+ + P G
Sbjct: 317 SPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTG 368
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 4.4
Identities = 25/112 (22%), Positives = 28/112 (25%), Gaps = 2/112 (1%)
Frame = +2
Query: 485 PPPPPRKXXXPQIGGXGXEXXFXXKGGXRPXPXKXXXXRXKTXGPAPXKXXKKIXXXXGG 664
PPPPP P + G G G P P T P P G
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPP-PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 301
Query: 665 GXXXGXPPXXK--LXXXXXPXGGGRXPXXXLXXXXSPPKXXXRGXLFPXPXG 814
PP P GG P PP+ + P G
Sbjct: 302 SPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTG 353
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.152 0.524
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,829,628
Number of Sequences: 27780
Number of extensions: 395176
Number of successful extensions: 740
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3881690894
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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