Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_I04
         (1298 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0490 + 22672241-22674679                                         31   1.5  
01_05_0170 - 18888849-18889880                                         31   2.6  
03_06_0422 + 33818887-33819996                                         29   6.1  

>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 243 RPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAMPGTPP 386
           +P + + T+T  P  L    R+W   + E+VLEQ S    + MP  PP
Sbjct: 296 QPQQPVETVTPTPPPLAR-SRRWNPEMLEVVLEQESRVEETTMPPPPP 342


>01_05_0170 - 18888849-18889880
          Length = 343

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = +1

Query: 46  HLGCSLLSRAAPYKNKMLSAARLIAPGSQVCHLLQLCTGATTC-SCTHPYTDGTCCPYTA 222
           H    L     PY ++  S  R++       H ++      +C SCT  Y     C + A
Sbjct: 225 HGSDELFKATTPYHHEWFSLYRMVKQEEIPVHDIKNAIVVQSCDSCTRTYMIPASCDFAA 284

Query: 223 LCS 231
           LCS
Sbjct: 285 LCS 287


>03_06_0422 + 33818887-33819996
          Length = 369

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -2

Query: 487 ESEEQQERHHKTEQTHGLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 317
           E   ++ER  + E+T  L    + N   E ++L+G       D+  +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,791,269
Number of Sequences: 37544
Number of extensions: 697467
Number of successful extensions: 1970
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1961
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4050598896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)