Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_I04
(1298 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 77 4e-14
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 77 4e-14
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 77 4e-14
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 31 1.8
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 30 3.1
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 30 3.1
AF125443-1|AAD12801.1| 783|Caenorhabditis elegans Hypothetical ... 29 7.2
Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 29 9.5
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 76.6 bits (180), Expect = 4e-14
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +2
Query: 227 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 406
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65
Query: 407 YAILGFALSE 436
YAILGFALSE
Sbjct: 66 YAILGFALSE 75
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 76.6 bits (180), Expect = 4e-14
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +2
Query: 227 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 406
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65
Query: 407 YAILGFALSE 436
YAILGFALSE
Sbjct: 66 YAILGFALSE 75
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 76.6 bits (180), Expect = 4e-14
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +2
Query: 227 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 406
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 30 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89
Query: 407 YAILGFALSE 436
YAILGFALSE
Sbjct: 90 YAILGFALSE 99
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 31.1 bits (67), Expect = 1.8
Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Frame = +1
Query: 91 KMLSAARLIAPGSQVCHLLQLCTGATTC---SCT----HPYTDGTCCPYTALCSAV 237
K SA APG C + + CTG TC CT H DG C P A S V
Sbjct: 1428 KQKSAPAFAAPGD-TCSMREKCTGGATCFEGMCTCDDHHFAEDGYCRPIEARSSKV 1482
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 30.3 bits (65), Expect = 3.1
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = -2
Query: 373 GIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYH 197
G D+ + CS S G + S C C + + G GP C E CR RY
Sbjct: 1534 GFQGDKCEQKCSEGSFGPACSQQCNCGKYKCDATDGKCICP-VGRHGPLCEEECRPGRY- 1591
Query: 196 LCMGGYSCKWSHQC 155
G SC+ QC
Sbjct: 1592 ----GQSCQNKCQC 1601
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 30.3 bits (65), Expect = 3.1
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = -2
Query: 373 GIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYH 197
G D+ + CS S G + S C C + + G GP C E CR RY
Sbjct: 1534 GFQGDKCEQKCSEGSFGPACSQQCNCGKYKCDATDGKCICP-VGRHGPLCEEECRPGRY- 1591
Query: 196 LCMGGYSCKWSHQC 155
G SC+ QC
Sbjct: 1592 ----GQSCQNKCQC 1601
>AF125443-1|AAD12801.1| 783|Caenorhabditis elegans Hypothetical
protein H32C10.3 protein.
Length = 783
Score = 29.1 bits (62), Expect = 7.2
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -2
Query: 913 YRCRHSRTDNSHNKTRCQYSRE--IHEINWLHFFILSSNFVMFVH*CLT*F 767
+ C +T +SH+ ++C + H W+H + N FV CLT F
Sbjct: 544 FTCWIPKTSSSHHCSQCDKCVDGFDHHCPWIHKCVYRKNLRAFVFFCLTIF 594
>Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical
protein C54D10.6 protein.
Length = 348
Score = 28.7 bits (61), Expect = 9.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 524 PTYEVSVYTIWSGQPWNRMFGNLTLIVMQ 610
P + VSVY I PWN +F ++V Q
Sbjct: 29 PLFLVSVYCILKKSPWNMVFYKWLILVFQ 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,822,921
Number of Sequences: 27780
Number of extensions: 562374
Number of successful extensions: 1769
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1740
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3621523944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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