Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_I02
         (1302 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    27   0.31 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    25   1.6  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   8.7  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
            protein.
          Length = 406

 Score = 27.1 bits (57), Expect = 0.31
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = -2

Query: 1085 PXPPPXXPXPXXPPXXXXXXPPPPXSXPPPXPPXXXXPP 969
            P P    P P  PP        PP    PP P     PP
Sbjct: 153  PNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191



 Score = 26.2 bits (55), Expect = 0.54
 Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
 Frame = -3

Query: 1090 PPPXLPPPXPXXXPXPXXXXXPPPXP-XPXLPPPP--PPXXXXP 968
            P P +  P P   P        PP P  P LP PP  PP    P
Sbjct: 153  PNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 22.6 bits (46), Expect = 6.6
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = -1

Query: 1260 PSXPPXPXXPXXPPXXXXP 1204
            P  PP P  P  PP    P
Sbjct: 178  PQVPPLPLPPIFPPTMINP 196


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
            neuroblasts defectiveprotein protein.
          Length = 224

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = -2

Query: 1172 PPPXXPPXSPXXXPXXXXXPXXXPXXPPXPXPPP 1071
            PP    P      P         P  PP P PPP
Sbjct: 72   PPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPP 105


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
            homolog protein.
          Length = 276

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 14/44 (31%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
 Frame = -3

Query: 1111 LPXXXXPPPPXLPPPXPXXXPXPXXXXXPP--PXPXPXLPPPPP 986
            LP    PPPP          P P     P   P   P L   PP
Sbjct: 158  LPLHYPPPPPVYTHHYARYHPYPNFGVPPAGIPLQNPGLNLNPP 201


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,310
Number of Sequences: 336
Number of extensions: 3544
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 38432614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)