Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_I02
         (1302 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.36 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    25   1.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   3.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.36
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = -3

Query: 1090 PPPXLPPPXPXXXPXPXXXXXPPPXPXPXLPPPPPP 983
            P P   P  P     P     PPP   P  PP   P
Sbjct: 25   PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 26.2 bits (55), Expect = 0.63
 Identities = 14/47 (29%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
 Frame = -2

Query: 1103 PXXPPXPXPPPXXPXPXXPPXXXXXXPP--PPXSXPPPXPPXXXXPP 969
            P   P P   P  P    PP      PP  PP + P   P      P
Sbjct: 21   PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 25.0 bits (52), Expect = 1.4
 Identities = 13/41 (31%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
 Frame = -2

Query: 1091 PXPXPPPXXPXPXXPPXXXXXXPPP-PXSXPPPXPPXXXXP 972
            P    P   P P   P       PP P   PPP  P    P
Sbjct: 16   PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 5.8
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = -3

Query: 1180 PXLXXPXXPPXPPXPXXXPXXXXLPXXXXPPPPXLPPPXP 1061
            P    P   P P      P     P     PPP  PP  P
Sbjct: 16   PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor protein.
          Length = 168

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 16/69 (23%), Positives = 17/69 (24%)
 Frame = -2

Query: 1220 PXXXXPXXXXXPSPPXPPPXXPPXSPXXXPXXXXXPXXXPXXPPXPXPPPXXPXPXXPPX 1041
            P    P     P PP P     P +          P   P  P     P   P    P  
Sbjct: 98   PGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVY 157

Query: 1040 XXXXXPPPP 1014
                 PP P
Sbjct: 158  IPQPRPPHP 166


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 1024 PPXPXPXLPPPPPPXXXXP 968
            PP P P   PPPPP    P
Sbjct: 338  PPKPAP---PPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 4.4
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 1094 PPXPXPPPXXPXPXXP 1047
            PP P PPP  P    P
Sbjct: 338  PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 4.4
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 1019 PPXSXPPPXPPXXXXP 972
            PP   PPP PP    P
Sbjct: 338  PPKPAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,388
Number of Sequences: 438
Number of extensions: 10522
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44783499
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)