Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_H24
         (1240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    29   1.3  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    28   2.3  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   4.1  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   7.1  

>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 365 SYIGLPGPGSRATSPHSPVEPPDASPH 285
           S IGL    +   SP+ PV  P ASPH
Sbjct: 159 SRIGLSSSPTNTPSPNLPVSQPSASPH 185


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 247 SPSWASVTSRPAWNGAARDPS 185
           +P+W S +  PAWN  +R P+
Sbjct: 836 TPAWNSGSKTPAWNSGSRTPA 856



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 247 SPSWASVTSRPAWNGAARDPS 185
           +P+W S    PAWN  +R P+
Sbjct: 854 TPAWNSGNKTPAWNAGSRTPA 874



 Score = 26.6 bits (56), Expect = 7.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 247 SPSWASVTSRPAWNGAARDPS 185
           +P+W S    PAWN   + PS
Sbjct: 890 TPAWNSGAKTPAWNAGNKTPS 910


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 172 NHSVSNSPSFAVRKVNSFELNLKNHNHF 89
           N S +N+PS+ VRK  +  LN ++   F
Sbjct: 646 NSSAANTPSWGVRKARASALNARSEEDF 673


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -1

Query: 247 SPSWASVTSRPAWNGAARDPSPAXCNHSVSNSPSFAVRKV---NSFELNLKNHNHF 89
           SP+  + T++P+ +    DP+      S SNSP+ +        S   N +NH +F
Sbjct: 243 SPANGAPTNKPSTDINTTDPATQTTQVSASNSPALSGSSTPSNTSSRSNRQNHGNF 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,807
Number of Sequences: 5004
Number of extensions: 50174
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 673357516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)