Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_H24
         (1240 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0603 - 23580283-23580627,23580970-23581174,23581286-235814...    29   5.7  
04_04_0675 + 27183826-27184443                                         29   7.6  
06_03_0215 - 18080286-18080914,18080925-18080997                       29   10.0 

>01_05_0603 -
           23580283-23580627,23580970-23581174,23581286-23581407,
           23581493-23581675
          Length = 284

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 347 GPGSRATSPHSPVEPPDASPHGCSLFP 267
           G G    SP    +P D+SPHGCSL P
Sbjct: 141 GNGRLRISPFH--DPDDSSPHGCSLCP 165


>04_04_0675 + 27183826-27184443
          Length = 205

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 18/53 (33%), Positives = 21/53 (39%)
 Frame = -3

Query: 353 LPGPGSRATSPHSPVEPPDASPHGCSLFPG*RPHRLTQLGLGDLQTSLERSRE 195
           L GP   A+   SP  PP ASP      P   P +  +L  GD     E   E
Sbjct: 94  LDGPSPSASPSQSPSPPPPASPPPLPPAPSSPPPKKRRLPDGDADADAEDDGE 146


>06_03_0215 - 18080286-18080914,18080925-18080997
          Length = 233

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 347 GPGSRATSPHSPVEPPDASPHGCSLFPG*RP 255
           G G+R  S   P  PP A+  GC + PG +P
Sbjct: 154 GAGARLPSVE-PARPPSAASRGCQVGPGRQP 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,652,910
Number of Sequences: 37544
Number of extensions: 429958
Number of successful extensions: 1669
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1668
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3817805856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)