Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_H24
         (1240 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    29   6.8  
AF067607-7|AAF98613.1|  433|Caenorhabditis elegans Serpentine re...    29   6.8  
AC024810-10|AAF60767.1|  165|Caenorhabditis elegans Hypothetical...    29   9.0  

>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 350  PGPGSRATSPHSPVEPPDASPHGCS 276
            PGPG    SP+ P +P   SP+G S
Sbjct: 940  PGPGPGPPSPNGPSDPNKPSPNGPS 964


>AF067607-7|AAF98613.1|  433|Caenorhabditis elegans Serpentine
           receptor, class t protein59 protein.
          Length = 433

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +2

Query: 359 YKRCLP--GLRELKW**TAVAQRDPRLTGLSAERRLRQPPCRVGRRTY-THRLRRTVPGY 529
           Y++CL   G R+++W    +++    + G +  RR   PPC +  R +  H       G 
Sbjct: 42  YEQCLKEAGFRDIEWLAPTISENGQEVLGEAFCRRFLNPPCDIVFRCFKPHAYYYNCSGI 101

Query: 530 RRAQSVG 550
           R    +G
Sbjct: 102 RDPFEIG 108


>AC024810-10|AAF60767.1|  165|Caenorhabditis elegans Hypothetical
           protein Y54E10A.13 protein.
          Length = 165

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -1

Query: 274 CSLGKGRTASPSWASVTSRPAWNGAARDPSP---AXCNHSVSNSP 149
           CS+   R +SPS  S +S P  +G AR+ SP   +  + S+  SP
Sbjct: 93  CSVSLPRPSSPSIRSNSSVPTASGGARNGSPSTRSSTSSSIQGSP 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,664,378
Number of Sequences: 27780
Number of extensions: 314485
Number of successful extensions: 953
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3432936682
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)