Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_H23
         (1242 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   2.5  
02_05_0159 - 26368562-26369239,26371374-26371853                       29   7.6  
01_05_0160 + 18751512-18751960,18752082-18752553                       29   7.6  

>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 509 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 667
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>02_05_0159 - 26368562-26369239,26371374-26371853
          Length = 385

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 831 VQPGKTRLIATGQQPLVTGLXXRGM*AVLQXS*SGG 938
           V+PG+TRL+A    PL      R + AVL    +GG
Sbjct: 30  VEPGRTRLVAVAAPPLPAPALQRRVRAVLYYRGAGG 65


>01_05_0160 + 18751512-18751960,18752082-18752553
          Length = 306

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 9   STPIGNPLXFHVVPAAAGSP 68
           + P+G+P+  H+VPAA G+P
Sbjct: 262 AAPMGHPVAGHMVPAAVGTP 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,752,910
Number of Sequences: 37544
Number of extensions: 629019
Number of successful extensions: 1849
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1849
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3829445508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)