Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_H22
         (1251 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...   111   2e-25
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...   104   3e-23
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   4.1  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   7.2  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   9.5  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   9.5  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
            L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  111 bits (267), Expect = 2e-25
 Identities = 58/106 (54%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
 Frame = +2

Query: 695  VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 874
            V KA  AQ+ V KG H K  RK+R S  FRRPKT E  R PKY RKS+P  +R+D Y II
Sbjct: 3    VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62

Query: 875  KFPLTSEAAMKKIEDNNTLVFIVHTSANKH-ISGXSQKIYDIMLLK 1009
              P+ SE+AMKKIED+NTLVF VH  ANK  I    +K+Y +  +K
Sbjct: 63   VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVK 108


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
            L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  104 bits (249), Expect = 3e-23
 Identities = 55/106 (51%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
 Frame = +2

Query: 695  VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 874
            V KA  AQ+ V KG H K  +K+R S  FRRPKT +  R PKY RKS+    R+D Y II
Sbjct: 3    VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62

Query: 875  KFPLTSEAAMKKIEDNNTLVFIVHTSANKH-ISGXSQKIYDIMLLK 1009
              P+ SE+AMKKIED+NTLVF VH  ANK  I    +K+Y +  +K
Sbjct: 63   VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVK 108


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -3

Query: 859 IHAISLRQRLPWVFRVPR--RFKRLGSAEMHRVANFPYSLPMFTFYNLPLSLKCFSNRFH 686
           + A  +  R P   R P+  RF+ L S++   + + PY+ P   F     S +    + H
Sbjct: 196 LRASPVSSRTPSPTRFPKHARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMH 255

Query: 685 YFFLSLNPSL 656
               S  PSL
Sbjct: 256 RRTKSATPSL 265


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -1

Query: 969 DMCLFALVWTIKTKVLLSSIFFIAASDVRGNLMML*ASMRFLLGRDFLGYLGCLGGSNV- 793
           DMC+   +W +      +  +F  +   R  +++L     +L    FLG   C+    + 
Sbjct: 652 DMCVSWGLWLLVFGAKFTESYFFLSLSFRDPILVLSTMKPYLCNITFLGSHLCIWQPKIL 711

Query: 792 LGLRKCTELRIF 757
           LG+   T+L +F
Sbjct: 712 LGIMYVTDLVLF 723


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 595 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 684
           S+NCQ  +    +++C EA  D D G  K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 964 VLVCTCMDNKDQGVVIFNLLHCCFRREREFNDVVGIHAISLRQ 836
           V++  C+D KD  + +     C  + + EF DV+  + +   Q
Sbjct: 788 VILLDCLDPKDPTIKLQKQKACLNKYKEEFADVIFFYLVDTEQ 830


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,578
Number of Sequences: 5004
Number of extensions: 41798
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 677627698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)