Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_H22
(1251 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal prote... 114 1e-25
Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical pr... 107 2e-23
Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical pr... 31 2.3
Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical pr... 31 2.3
X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein. 31 2.3
X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein. 31 2.3
AC024797-3|AAF60706.1| 112|Caenorhabditis elegans Hypothetical ... 29 6.9
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 29 9.1
>U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 25.1 protein.
Length = 147
Score = 114 bits (274), Expect = 1e-25
Identities = 55/104 (52%), Positives = 75/104 (72%), Gaps = 1/104 (0%)
Frame = +2
Query: 701 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 880
KAL A++KVVKG+ R++R SVHFRRP T + R ++PRKS PK ++MD + II+
Sbjct: 11 KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQH 70
Query: 881 PLTSEAAMKKIEDNNTLVFIVHTSANKH-ISGXSQKIYDIMLLK 1009
PLT+E+AMKKIE++NTLVFIV ANK+ I K+Y++ LK
Sbjct: 71 PLTTESAMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNVQALK 114
>Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical protein
F52B5.6 protein.
Length = 146
Score = 107 bits (256), Expect = 2e-23
Identities = 52/106 (49%), Positives = 73/106 (68%), Gaps = 1/106 (0%)
Frame = +2
Query: 695 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 874
V KA++A++ VVKG + +R SVHFRRPKT R P+Y RKS P R+++D++ +I
Sbjct: 8 VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVI 67
Query: 875 KFPLTSEAAMKKIEDNNTLVFIVHTSANK-HISGXSQKIYDIMLLK 1009
K P T+E++MKKIED+NTLVFIV ANK HI +Y++ +K
Sbjct: 68 KAPHTTESSMKKIEDHNTLVFIVDEKANKHHIKRAVHALYNVKAVK 113
>Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical
protein F17E5.1b protein.
Length = 620
Score = 30.7 bits (66), Expect = 2.3
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 725 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 901
V+ G HG R I+N++ R P F P H P P+++ +D + + +T+E
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490
Query: 902 MKKIEDNNTLVFIVH 946
M I++N L + H
Sbjct: 491 MADIQNNEYLEYGTH 505
>Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical
protein F17E5.1a protein.
Length = 961
Score = 30.7 bits (66), Expect = 2.3
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 725 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 901
V+ G HG R I+N++ R P F P H P P+++ +D + + +T+E
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831
Query: 902 MKKIEDNNTLVFIVH 946
M I++N L + H
Sbjct: 832 MADIQNNEYLEYGTH 846
>X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein.
Length = 620
Score = 30.7 bits (66), Expect = 2.3
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 725 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 901
V+ G HG R I+N++ R P F P H P P+++ +D + + +T+E
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490
Query: 902 MKKIEDNNTLVFIVH 946
M I++N L + H
Sbjct: 491 MADIQNNEYLEYGTH 505
>X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein.
Length = 961
Score = 30.7 bits (66), Expect = 2.3
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 725 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 901
V+ G HG R I+N++ R P F P H P P+++ +D + + +T+E
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831
Query: 902 MKKIEDNNTLVFIVH 946
M I++N L + H
Sbjct: 832 MADIQNNEYLEYGTH 846
>AC024797-3|AAF60706.1| 112|Caenorhabditis elegans Hypothetical
protein Y48G8AR.3 protein.
Length = 112
Score = 29.1 bits (62), Expect = 6.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 773 VHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAM 904
+ FRR + RH R+++P ++ I KFP SE A+
Sbjct: 1 MEFRRKCSRSAMRHKSQKRRAMPNQDVEKVNEIFKFPRISEQAL 44
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 28.7 bits (61), Expect = 9.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 754 YSLPMFTFYNLPLSLKCFSNRFHYFF 677
+S + FYNL L KCFS FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,545,890
Number of Sequences: 27780
Number of extensions: 242662
Number of successful extensions: 892
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3474674514
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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