Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_H21
         (1352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    36   0.017
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.6  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    27   4.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   6.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   7.9  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   7.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.5 bits (78), Expect = 0.017
 Identities = 33/132 (25%), Positives = 39/132 (29%), Gaps = 1/132 (0%)
 Frame = +1

Query: 448 GAPXXSPPXXPLAPGXXXGGXXXPPPXGGXXVXPKXGGXPGKXXXXXGPXXXQXPKXGXL 627
           G+   S P  P  P     G    PP G     P     P +     G      P     
Sbjct: 330 GSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP----PPRSAPSTG--RQPPPLSSSR 383

Query: 628 GGFXPXAPPPXXXXKNXPPIXXGXXPXGXXKXXGXPP-GXPPPXPPXSXPGXXRXPXPXF 804
               P APPP    ++ P +     P G       PP   PP  PP + P       P  
Sbjct: 384 AVSNPPAPPPAIPGRSAPALP----PLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSL 439

Query: 805 PXGEGGXXXXPP 840
           P G       PP
Sbjct: 440 PMGAPAAPPLPP 451


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 733 PPGXPPPXPPXSXPGXXRXPXPXFPXG 813
           PPG PPP PP         P P  P G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/48 (27%), Positives = 17/48 (35%)
 Frame = +1

Query: 649 PPPXXXXKNXPPIXXGXXPXGXXKXXGXPPGXPPPXPPXSXPGXXRXP 792
           PPP    +N PP      P    +    PP   P  P  + P   + P
Sbjct: 206 PPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPPVQAYPQAPQQP 253


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 19/72 (26%), Positives = 20/72 (27%)
 Frame = +1

Query: 640 PXAPPPXXXXKNXPPIXXGXXPXGXXKXXGXPPGXPPPXPPXSXPGXXRXPXPXFPXGEG 819
           P  PPP        P      P       G PP  PPP    + P     P P    G G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMG-GPPPPPPPPGVAGAGPPPPPPPPPAVSAG-G 789

Query: 820 GXXXXPPXXGXP 855
                P     P
Sbjct: 790 SRYYAPAPQAEP 801



 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +2

Query: 452 PXPXPPPXXPWPXXFXXGXXXXPPPXGXXGXPPXXGXXP 568
           P P P P  P P     G    PPP G  G  P     P
Sbjct: 744 PAPAPIPVPP-PAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 17/58 (29%), Positives = 18/58 (31%)
 Frame = -1

Query: 1097 SPXXGPPPPKXFXXPPPKXXPGXGKPGXPXGXXPXGGKXXXXPGGGXQXXXXPGKGPP 924
            +P   PP PK     PP   P  G P  P    P  G     P         P  G P
Sbjct: 1154 APSGAPPVPKPSVAAPPVPAPSSGIPPVP---KPAAGVPPVPPPSEAPPVPKPSVGVP 1208


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
 Frame = +3

Query: 498 GGGXGXPPP-XGGXXGXPQXXGXPRXKXXXQXXXXGPXPXXGXXGG 632
           GGG G PPP  GG  G     G             GP    G  GG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239



 Score = 26.6 bits (56), Expect = 7.9
 Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = +1

Query: 931  PFPGXFXXWXPPPGKXXXFPPXGXXPXGXPGFPX-PGXFXGGGXXXFXGGGGPXXG 1095
            P PG F  +    G+       G    G  GF   PG F GGG   F GG G   G
Sbjct: 202  PGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGF-GGGPGGFGGGLGGFGG 256


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -1

Query: 560 PPXLGXTXXPPXGGGXXXPPXXXP 489
           PP +G T  PP   G   PP   P
Sbjct: 928 PPKVGETYHPPTASGTRVPPVQQP 951


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,434
Number of Sequences: 5004
Number of extensions: 41782
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 745191750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)