Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_H20
         (1314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    27   4.3  
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    27   5.7  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    27   7.6  

>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -2

Query: 584 HLKRQSRFNICSAARHQRCCSDVVRPRSPLHRHNGIDLTAASAPPGT 444
           H++RQ  F +    R +    D++      H+H  I   AA   P T
Sbjct: 145 HVQRQDVFTVHELKRIESILEDLINAAGASHKHGEIGCAAAIYDPTT 191


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 626 YAGSYCKRTPAIKATRGPAGRSGLYRRDADPERRGDGRLLRRAV 757
           + G +  R   + ++ G  GRS +  RD+ P   G  R   R++
Sbjct: 86  HVGRWANRHSNVSSSSGSRGRSSVSSRDSSPSYSGALRSAERSI 129


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -2

Query: 356 TLARTQTRTPQKLALHFVVSIRRHVSLSHNRK*AKSNNKDQPRAPITGHSQITNAQ 189
           ++A  Q    Q +  HF+    R+VSL        SNN    R P+T  S+I+N+Q
Sbjct: 118 SVAAAQAALNQDVGQHFIEEEERNVSL--------SNNSSGQRQPLT-ESKISNSQ 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,515,636
Number of Sequences: 5004
Number of extensions: 65823
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 719358436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)