Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_H20
         (1314 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...   119   5e-27
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    29   9.6  

>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score =  119 bits (286), Expect = 5e-27
 Identities = 61/84 (72%), Positives = 66/84 (78%), Gaps = 2/84 (2%)
 Frame = +3

Query: 603 PRRARMD--SMRGPIANGPLQSRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTSEIHX 776
           P++A  D  SM     NGP  SRPLVALLDGRDC+VEMPILKDVATVAFCDAQST EIH 
Sbjct: 156 PQQALNDILSMTSTRMNGPSSSRPLVALLDGRDCSVEMPILKDVATVAFCDAQSTQEIHE 215

Query: 777 KVLNEXVGALMWHTIILTKEDLXK 848
           KVLNE V ALM+H+I L KEDL K
Sbjct: 216 KVLNEAVAALMYHSIKLEKEDLEK 239



 Score = 33.9 bits (74), Expect = 0.26
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 851 KALRIIXRIGSGVXNIXXEAAGXXXIXXCNVPG 949
           K L+++ RIG G+ NI  +AA    I  C+ PG
Sbjct: 241 KVLKVVFRIGYGIDNIDVKAATELGIAVCHAPG 273


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 20/49 (40%), Positives = 21/49 (42%)
 Frame = -2

Query: 470 TAASAPPGTARRTTLSPCH*HLNTHTRARASTSRDVVCTLARTQTRTPQ 324
           TA+SAP  TA  TT  P      T T    STS   V T     T T Q
Sbjct: 348 TASSAPASTAVVTTTMPVTTVQTTVTSIGTSTSPQAVVTTTGNPTTTAQ 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,241,281
Number of Sequences: 27780
Number of extensions: 404591
Number of successful extensions: 936
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3673557334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)