Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_H16
         (1393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||...   127   4e-30
SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S...    27   4.7  

>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score =  127 bits (306), Expect = 4e-30
 Identities = 59/73 (80%), Positives = 70/73 (95%)
 Frame = +2

Query: 47  PDTGISSQAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRLLLPGELAKH 226
           PDTGIS+QAM I+NSFVNDIFERIA EAS+LA YNK+STI+SRE+QT+VRL+LPGELAKH
Sbjct: 50  PDTGISNQAMRILNSFVNDIFERIATEASKLAAYNKKSTISSREIQTAVRLILPGELAKH 109

Query: 227 AVSEGTKAVTKYT 265
           AV+EGTK+VTKY+
Sbjct: 110 AVTEGTKSVTKYS 122


>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 116

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 59  ISSQAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRLL 202
           IS +A   +   V++    +  EAS      KR TIT  +V  ++  L
Sbjct: 31  ISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDVLLALNTL 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,817
Number of Sequences: 5004
Number of extensions: 39631
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 771025064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)